Transcript: Mouse XM_017320452.1

PREDICTED: Mus musculus GC-rich promoter binding protein 1-like 1 (Gpbp1l1), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Gpbp1l1 (77110)
Length:
3415
CDS:
1207..2628

Additional Resources:

NCBI RefSeq record:
XM_017320452.1
NBCI Gene record:
Gpbp1l1 (77110)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017320452.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000246903 ATAAGCCGTCGTCGACATAAT pLKO_005 1330 CDS 100% 13.200 18.480 N Gpbp1l1 n/a
2 TRCN0000246902 TCTACGGACTACGGGAGATTC pLKO_005 1380 CDS 100% 10.800 15.120 N Gpbp1l1 n/a
3 TRCN0000191345 CCCAAGTGTCTATAAGAACTT pLKO.1 1890 CDS 100% 4.950 3.960 N Gpbp1l1 n/a
4 TRCN0000217647 GAAGCAGAGCACAGGTTATTA pLKO.1 2359 CDS 100% 15.000 10.500 N Gpbp1l1 n/a
5 TRCN0000246905 GAAGCAGAGCACAGGTTATTA pLKO_005 2359 CDS 100% 15.000 10.500 N Gpbp1l1 n/a
6 TRCN0000191795 GCCTTGTGTTTAGAGAATATA pLKO.1 2667 3UTR 100% 15.000 10.500 N Gpbp1l1 n/a
7 TRCN0000217245 CTCTGAAGGATGAACGAAATG pLKO.1 2180 CDS 100% 10.800 7.560 N Gpbp1l1 n/a
8 TRCN0000246904 TCAACGCCACAGTCATCTAAG pLKO_005 1246 CDS 100% 10.800 7.560 N Gpbp1l1 n/a
9 TRCN0000246906 TTACCTGCTTAATAGGCATTT pLKO_005 2796 3UTR 100% 10.800 7.560 N Gpbp1l1 n/a
10 TRCN0000191163 CCAATCCAATTTCTGTTACTA pLKO.1 2015 CDS 100% 5.625 3.938 N Gpbp1l1 n/a
11 TRCN0000183228 GCAATCATTGTCAATGACAAA pLKO.1 2963 3UTR 100% 4.950 3.465 N GPBP1L1 n/a
12 TRCN0000146336 CCATGCAAATGGGAACAAATT pLKO.1 1857 CDS 100% 13.200 9.240 N GPBP1L1 n/a
13 TRCN0000330087 CCATGCAAATGGGAACAAATT pLKO_005 1857 CDS 100% 13.200 9.240 N GPBP1L1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017320452.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08790 pDONR223 100% 87.1% 88.4% None (many diffs) n/a
2 ccsbBroad304_08790 pLX_304 0% 87.1% 88.4% V5 (many diffs) n/a
3 TRCN0000473528 GTCTCTAGAACAGGACTCGGACGG pLX_317 39.1% 87.1% 88.4% V5 (many diffs) n/a
4 ccsbBroadEn_15955 pDONR223 0% 87% 88.4% None (many diffs) n/a
5 ccsbBroad304_15955 pLX_304 0% 87% 88.4% V5 (many diffs) n/a
6 TRCN0000472053 GCGCGAGTGACTAACCTCTGGTAG pLX_317 39.3% 87% 88.4% V5 (many diffs) n/a
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