Construct: ORF TRCN0000472090

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017717.1_s317c1
Derived from:
ccsbBroadEn_12125
DNA Barcode:
AATGTGTTTTGCTAGTGGTTACGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TTC12 (54970)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472090
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54970 TTC12 tetratricopeptide repeat do... XM_017017950.2 95.3% 93.4% (many diffs)
2 human 54970 TTC12 tetratricopeptide repeat do... XM_017017949.2 95.1% 93.1% (many diffs)
3 human 54970 TTC12 tetratricopeptide repeat do... NM_017868.4 95% 92% (many diffs)
4 human 54970 TTC12 tetratricopeptide repeat do... XM_024448595.1 95% 92% (many diffs)
5 human 54970 TTC12 tetratricopeptide repeat do... XM_017017948.2 94.2% 92.5% (many diffs)
6 human 54970 TTC12 tetratricopeptide repeat do... NM_001318533.2 94.2% 91.3% (many diffs)
7 human 54970 TTC12 tetratricopeptide repeat do... XM_017017947.2 92.6% 92.5% (many diffs)
8 human 54970 TTC12 tetratricopeptide repeat do... XM_005271604.3 92.2% 92.1% (many diffs)
9 human 54970 TTC12 tetratricopeptide repeat do... XM_017017943.2 92.2% 92.1% (many diffs)
10 human 54970 TTC12 tetratricopeptide repeat do... XM_017017944.2 92.2% 92.1% (many diffs)
11 human 54970 TTC12 tetratricopeptide repeat do... XM_017017945.1 92.2% 92.1% (many diffs)
12 human 54970 TTC12 tetratricopeptide repeat do... XM_017017946.1 92.2% 92.1% (many diffs)
13 human 54970 TTC12 tetratricopeptide repeat do... NM_001352037.2 91.6% 88.6% (many diffs)
14 human 54970 TTC12 tetratricopeptide repeat do... XM_024448594.1 88.7% 83.9% (many diffs)
15 human 54970 TTC12 tetratricopeptide repeat do... XR_001747914.2 88.5% (many diffs)
16 human 54970 TTC12 tetratricopeptide repeat do... XM_024448596.1 86.7% 83.6% (many diffs)
17 human 54970 TTC12 tetratricopeptide repeat do... NR_147891.2 86.2% 1_51del;268A>C;2248_2544del
18 human 54970 TTC12 tetratricopeptide repeat do... NM_001352038.2 74.6% 71.9% (many diffs)
19 human 54970 TTC12 tetratricopeptide repeat do... XM_024448597.1 73.1% 72.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2262
ORF length:
2196
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga tgctgataaa gagaaagatt tgcagaaatt tcttaaaaat gtggatgaaa
121tctccaattt aattcaggag atgaattctg atgacccagt tgtgcaacag aaagctgtcc
181tggagacaga aaagagacta ctgcttatgg aggaagacca ggaggaggat gaatgcagga
241ccaccttgaa caagactatg atcagtcctc cacaaactgc tctgaagagt gcagaagaaa
301taaactcaga ggccttcttg gcatctgtgg agaaggatgc aaaggaacga gccaagagaa
361gaagggaaaa caaagtcttg gcggatgccc taaaagaaaa agggaatgaa gcatttgctg
421aaggcaatta tgaaacagct atcctgcgct acagtgaggg tttggagaag ctgaaggaca
481tgaaagtgct gtacaccaac cgagcccagg cttatatgaa acttgaggac tatgagaagg
541cactggtgga ttgtgagtgg gctctcaagt gtgatgaaaa atgcacaaaa gcatattttc
601acatgggaaa agccaacctg gccctgaaga actacagtgt gtctagagag tgttataaga
661agatcttaga aataaacccc aagctgcaaa cccaggtgaa aggttacctg aatcaagtag
721atcttcagga aaaagcagac cttcaagaaa aggaagccca cgaactgctg gattcaggaa
781agaacacagc cgtgaccacc aagaacctcc tggagaccct ttccaagcct gaccagatcc
841ccttgttcta tgctgggggg attgagatcc tgactgaaat gataaatgag tgcacagaac
901aaactttatt cagaatgcac aatggattta gtatcatcag tgacaacgag gtcataagaa
961ggtgtttttc cacagcagga aatgatgcag ttgaagaaat ggtctgtgtg tctgttctca
1021agctctggca agcagtgtgc agcaggaacg aggaaaacca gcgtgtgcta gtgatacacc
1081atgacagggc caggctgttg gccgccctct tgtcctccaa ggtcctggcc atccggcagc
1141agagctttgc cctgctgctg catctcgccc agactgagag cggacggagc ctgatcatca
1201accaccttga cctgaccaga ttattggaag cgctggtgtc atttcttgat ttctcggata
1261aggaggccaa cactgctatg ggactgttca cagacttggc tctggaagaa agattccaag
1321tctggttcca ggccaacctt ccaggtgttc tccctgcact cacaggcgtt ctgaagacag
1381atcccaaggt aagcagctcc tcggctctgt gccagtgcat tgccatcatg ggaaacctca
1441gtgctgagcc cactacccga agacacatgg cggcctgtga ggaatttggg gatggctgct
1501tgagcctcct ggccaggtgt gaggaggatg tggacctgtt cagagaggtt atctacacac
1561tcctgggact catgatgaac ctgtgtcttc aggctccctt tgtctctgag gtttgggctg
1621tggaggtgag cagaaggtgc ctgtctttac taaacagcca ggatggagga atcctgacaa
1681gagctgctgg tgttctgagc cggacccttt cttcctctct gaaaattgtt gaggaggcct
1741tgcgagcagg agtggtaaag aaaatgatga aattcctgaa gacaggaggt gagactgcat
1801cacgttatgc tataaagata ctagctatct gcacgaatag ttatcatgaa gctcgggaag
1861aagtaataag actggataaa aagttgagcg ttatgatgaa gctgctcagc tcggaggatg
1921aggttctggt gggcaacgct gccctctgcc ttggtaactg catGGAGGTG CCCAACGTTG
1981CGTCTTCCCT GCTAAAGACG GACCTTTTGC AGGTCTTGTT AAAGCTTGCA GGCAGTGACA
2041CACAGAAGAC GGCCGTGCAG GTGAACGCAG GCATTGCTCT GGGGAAGCTG TGCACAGCTG
2101AGCCCAGAGT GCCTGCCGAG AGCAGTCATC TCCAATTTGG AAGAGAGTCT GCTGCACCTG
2161AAGCTCTGTC TCCTCGCAGG TGGGAAGAGA TGTTTCACAT GCTAGTATTC TCCCTCTCCA
2221GTGTGGATCC ACCCCCGCCA CCGCCCCAAA CTTGTTACCC CTACCCAACT TTCTTGTACA
2281AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
2341AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
2401AGGACGAAAT GTGTTTTGCT AGTGGTTACG AACGCGTTAA GTCgacaatc aacctctgga
2461ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)