Construct: ORF TRCN0000472111
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016922.1_s317c1
- Derived from:
- ccsbBroadEn_10643
- DNA Barcode:
- CCAGACCCTGCGCAATTGAGCCTG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LOC440700 (440700)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000472111
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 105371486 | LOC105371486 | uncharacterized LOC105371486 | XR_001752753.1 | 17.6% | (many diffs) | |
| 2 | human | 105371486 | LOC105371486 | uncharacterized LOC105371486 | XR_001752751.1 | 17.2% | (many diffs) | |
| 3 | human | 105371486 | LOC105371486 | uncharacterized LOC105371486 | XR_001752752.1 | 16.7% | (many diffs) | |
| 4 | human | 105371486 | LOC105371486 | uncharacterized LOC105371486 | XR_001752750.1 | 15.5% | (many diffs) | |
| 5 | human | 105371486 | LOC105371486 | uncharacterized LOC105371486 | XR_001752744.1 | 13.7% | (many diffs) | |
| 6 | human | 105371486 | LOC105371486 | uncharacterized LOC105371486 | XR_001752743.1 | 13.7% | (many diffs) | |
| 7 | human | 440700 | LOC440700 | carbonic anhydrase 14 pseud... | NR_036683.1 | 12.3% | 1_312del;463_1216del | |
| 8 | human | 105369380 | LOC105369380 | uncharacterized LOC105369380 | XR_001748493.1 | 11.1% | (many diffs) | |
| 9 | human | 105371486 | LOC105371486 | uncharacterized LOC105371486 | XR_001752749.1 | 9.4% | (many diffs) | |
| 10 | human | 105369380 | LOC105369380 | uncharacterized LOC105369380 | XR_950290.2 | 8.8% | (many diffs) | |
| 11 | human | 105374837 | LOC105374837 | uncharacterized LOC105374837 | XR_940309.2 | 6.9% | (many diffs) | |
| 12 | human | 101928080 | LOC101928080 | uncharacterized LOC101928080 | XR_930620.2 | 6.8% | (many diffs) | |
| 13 | human | 101928080 | LOC101928080 | uncharacterized LOC101928080 | XR_930619.2 | 6.6% | (many diffs) | |
| 14 | human | 154214 | RNF217 | ring finger protein 217 | XR_001743180.2 | 5% | (many diffs) | |
| 15 | human | 107984660 | LOC107984660 | uncharacterized LOC107984660 | XR_001750645.1 | 4.3% | (many diffs) | |
| 16 | human | 58504 | ARHGAP22 | Rho GTPase activating prote... | XM_017016476.1 | 3.9% | 2.5% | (many diffs) |
| 17 | human | 58504 | ARHGAP22 | Rho GTPase activating prote... | XM_024448100.1 | 3.8% | 2.5% | (many diffs) |
| 18 | human | 58504 | ARHGAP22 | Rho GTPase activating prote... | XM_011540013.3 | 3.7% | 2.4% | (many diffs) |
| 19 | human | 23357 | ANGEL1 | angel homolog 1 | NM_001370748.1 | 3.5% | 3.2% | (many diffs) |
| 20 | human | 107984660 | LOC107984660 | uncharacterized LOC107984660 | XR_001750646.1 | 3.4% | (many diffs) | |
| 21 | human | 23357 | ANGEL1 | angel homolog 1 | NM_001370746.1 | 3.3% | 3% | (many diffs) |
| 22 | human | 107984660 | LOC107984660 | uncharacterized LOC107984660 | XR_001750641.1 | 3.2% | (many diffs) | |
| 23 | human | 105371942 | LOC105371942 | uncharacterized LOC105371942 | XR_001753132.2 | 2.7% | (many diffs) | |
| 24 | human | 84909 | AOPEP | aminopeptidase O (putative) | XM_011519121.3 | 2.1% | 1.6% | (many diffs) |
| 25 | human | 105377329 | LOC105377329 | uncharacterized LOC105377329 | XR_938989.2 | 2.1% | (many diffs) | |
| 26 | human | 105372107 | LOC105372107 | uncharacterized LOC105372107 | XR_002958223.1 | 1.9% | (many diffs) | |
| 27 | human | 105372107 | LOC105372107 | uncharacterized LOC105372107 | XR_002959042.1 | 1.9% | (many diffs) | |
| 28 | human | 105377329 | LOC105377329 | uncharacterized LOC105377329 | XR_938986.2 | 1.9% | (many diffs) | |
| 29 | human | 105377329 | LOC105377329 | uncharacterized LOC105377329 | XR_938987.2 | 1.7% | (many diffs) | |
| 30 | human | 2829 | XCR1 | X-C motif chemokine receptor 1 | XR_001740107.1 | 1.6% | (many diffs) | |
| 31 | human | 6569 | SLC34A1 | solute carrier family 34 me... | XR_941113.2 | 1.6% | (many diffs) | |
| 32 | human | 105377329 | LOC105377329 | uncharacterized LOC105377329 | XR_001741766.1 | 1.3% | (many diffs) | |
| 33 | human | 105377329 | LOC105377329 | uncharacterized LOC105377329 | XR_938985.2 | 1.2% | (many diffs) | |
| 34 | human | 105377329 | LOC105377329 | uncharacterized LOC105377329 | XR_001741765.1 | 1% | (many diffs) | |
| 35 | human | 105377329 | LOC105377329 | uncharacterized LOC105377329 | XR_938984.2 | 1% | (many diffs) | |
| 36 | human | 105377329 | LOC105377329 | uncharacterized LOC105377329 | XR_938982.2 | .9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 248
- ORF end:
- 398
- ORF length:
- 150
- Sequence:
-
1 TGGAGTACGT CGTCTTTAGG TTGGGGGGAG GGGTTTTATG CGATGGAGTT TCCCCACACT 61 GAGTGGGTGG AGACTGAAGT TAGGCCAGCT TGGCACTTGA TGTAATTCTC CTTGGAATTT 121 GCCCTTTTTG AGTTTGGATC TTGGTTCATT CTCAAGCCTC AGACAGTGGT TCAAAGTTTT 181 TTTCTTCCAT TTCAGGTGTC GTGAGGCTAG CATCGATTGA TCAACAAGTT TGTACAAAAA 241 AGTTGGCATG CGGTGGCTCA CACCTGTAAT CCCAGCACTT TGGGAGGCGG AGGTGGGTGG 301 ATTGCCTGAG CTCAGGAGTT CCAGACCAGC CTGGACAACA TGGTGGACTT TCCAGAAAAT 361 ATGTAGCTAC CCAGCTACAC CTGCACTGGG GTCAGGATGC CCAACTTTCT TGTACAAAGT 421 GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG 481 AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA 541 CGACCAGACC CTGCGCAATT GAGCCTGACG CGTTAAGTCg acaatcaacc tctggattac 601 aaaatttgtg aaagatt