Construct: ORF TRCN0000472178

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017664.1_s317c1
Derived from:
ccsbBroadEn_03099
DNA Barcode:
TGTCGACCGAAGAGTGCGGCATTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TRA2A (29896)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472178
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 29896 TRA2A transformer 2 alpha homolog NM_013293.5 100% 100%
2 human 29896 TRA2A transformer 2 alpha homolog NM_001362759.2 77.6% 77.6% 335_336ins189
3 human 29896 TRA2A transformer 2 alpha homolog NM_001282757.1 64.1% 64.1% 0_1ins303
4 human 29896 TRA2A transformer 2 alpha homolog NM_001282758.1 64.1% 64.1% 0_1ins303
5 human 29896 TRA2A transformer 2 alpha homolog NM_001362760.2 64.1% 64.1% 0_1ins303
6 human 29896 TRA2A transformer 2 alpha homolog NM_001362761.2 64.1% 64.1% 0_1ins303
7 human 29896 TRA2A transformer 2 alpha homolog XM_017012090.1 64.1% 64.1% 0_1ins303
8 human 29896 TRA2A transformer 2 alpha homolog NM_001282759.1 63.8% 63.8% 0_1ins303;465_466insAGA
9 mouse 101214 Tra2a transformer 2 alpha homolog... NM_198102.2 88.9% 98.5% (many diffs)
10 mouse 101214 Tra2a transformer 2 alpha homolog... NM_001347209.1 88.3% 97.8% (many diffs)
11 mouse 101214 Tra2a transformer 2 alpha homolog... XM_006505240.1 81.2% 90% (many diffs)
12 mouse 101214 Tra2a transformer 2 alpha homolog... XM_006505241.1 81% 89.7% (many diffs)
13 mouse 101214 Tra2a transformer 2 alpha homolog... XM_006505242.1 80.7% 89.3% (many diffs)
14 mouse 101214 Tra2a transformer 2 alpha homolog... XM_006505243.1 80.3% 89% (many diffs)
15 mouse 101214 Tra2a transformer 2 alpha homolog... XM_006505245.1 56.9% 63.7% (many diffs)
16 mouse 101214 Tra2a transformer 2 alpha homolog... XM_011241102.1 56.9% 63.7% (many diffs)
17 mouse 101214 Tra2a transformer 2 alpha homolog... XM_017321288.1 56.6% 63.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
912
ORF length:
846
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag tgatgtggag gaaaacaact tcgagggcag agagtctcgc tctcagtcaa
121aatctccaac gggaactcct gctcgtgtaa aatcggagag caggtcagga tctcgtagtc
181catcaagggt ttccaaacac tctgaatccc attctcgatc aagatcaaaa tccaggtcga
241ggtcaaggag acattctcat agacgttaca ctcgatccag atcccactct cactctcata
301ggagacgatc tcgaagtaga tcatatacac cagaataccg gcggcgaagg agccgaagcc
361attctccaat gtctaaccgg agaagacata ctggcagcag ggcaaatcca gatcccaaca
421cttgccttgg agtgtttggc ctcagtttgt acacaacaga gagggatctt cgtgaagtat
481tttctcgata tggaccattg agtggtgtca atgtggttta tgatcagcga actgggcgat
541ctcgaggatt tgcttttgtg tattttgaga gaatagatga ctcaaaggag gctatggaaa
601gggcaaatgg aatggagctg gatggtagaa gaattcgggt ggattattct ataaccaaga
661gagcgcacac accaacacca ggcatctaca tgggcagacc aactcatagt ggtgggggtg
721gtggaggagg cggcggcggt ggaggtggag gtggtggcag acgtcgagat tcttactatg
781atagaggata tgatcgtggg tatgacagat atgaagacta tgattaccga tacagaagac
841gatcaccttc tccttaTTAT AGTCGATATA GATCACGATC AAGATCTCGT TCCTACAGCC
901CAAGACGCTA TTGCCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
961ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
1021CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGATGT CGACCGAAGA GTGCGGCATT
1081GACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)