Construct: ORF TRCN0000472187

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011602.1_s317c1
Derived from:
ccsbBroadEn_03011
DNA Barcode:
AATCTTGACCTTACTTGCCGGGTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CHMP2A (27243)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472187
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27243 CHMP2A charged multivesicular body... NM_014453.4 100% 100%
2 human 27243 CHMP2A charged multivesicular body... NM_198426.3 100% 100%
3 human 27243 CHMP2A charged multivesicular body... XM_005258746.3 83.7% 83.3% 542_670del
4 human 27243 CHMP2A charged multivesicular body... XM_005258747.3 83.7% 83.3% 542_670del
5 mouse 68953 Chmp2a charged multivesicular body... NM_026885.3 90.6% 99.5% (many diffs)
6 mouse 68953 Chmp2a charged multivesicular body... XM_006540345.3 90.6% 99.5% (many diffs)
7 mouse 68953 Chmp2a charged multivesicular body... XM_006540344.1 80.5% 88.4% (many diffs)
8 mouse 68953 Chmp2a charged multivesicular body... XM_011250690.1 80.5% 88.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
732
ORF length:
666
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga cctattgttc gggcgccgga agacgccaga ggagctactg cggcagaacc
121agagggccct gaaccgtgcc atgcgggagc tggaccgcga gcgacagaaa ctagagaccc
181aggagaagaa aatcattgca gacattaaga agatggccaa gcaaggccag atggatgctg
241ttcgcatcat ggcaaaagac ttggtgcgca cccGGCGCTA TGTGCGCAAG TTTGTATTGA
301TGCGGGCCAA CATCCAGGCT GTGTCCCTCA AGATCCAGAC ACTCAAGTCC AACAACTCGA
361TGGCACAAGC CATGAAGGGT GTCACCAAGG CCATGGGCAC CATGAACAGA CAGCTGAAGT
421TGCCCCAGAT CCAGAAGATC ATGATGGAGT TTGAGCGGCA GGCAGAGATC ATGGATATGA
481AGGAGGAGAT GATGAATGAT GCCATTGATG ATGCCATGGG TGATGAGGAA GATGAAGAGG
541AGAGTGATGC TGTGGTGTCC CAGGTTCTGG ATGAGCTGGG ACTTAGCCTA ACAGATGAGC
601TGTCGAACCT CCCCTCAACT GGGGGCTCGC TTAGTGTGGC TGCTGGTGGG AAAAAAGCAG
661AGGCCGCAGC CTCAGCCCTA GCTGATGCTG ATGCAGACCT GGAGGAACGG CTTAAGAACC
721TGCGGAGGGA CTGCCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
781ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG CCCGTAACTT GAAAGTATTT
841CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGAAAT CTTGACCTTA CTTGCCGGGT
901GACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)