Construct: ORF TRCN0000472278
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014034.1_s317c1
- Derived from:
- ccsbBroadEn_13013
- DNA Barcode:
- ATCCCGCCTTGATTGCCGCTGTTT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GLB1L3 (112937)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000472278
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 112937 | GLB1L3 | galactosidase beta 1 like 3 | XM_017017156.2 | 57.9% | 57.1% | (many diffs) |
| 2 | human | 112937 | GLB1L3 | galactosidase beta 1 like 3 | XM_011542571.2 | 55.4% | 53% | (many diffs) |
| 3 | human | 112937 | GLB1L3 | galactosidase beta 1 like 3 | XM_011542569.2 | 53% | 51.3% | (many diffs) |
| 4 | human | 112937 | GLB1L3 | galactosidase beta 1 like 3 | XM_011542570.2 | 50.9% | 49.2% | (many diffs) |
| 5 | human | 112937 | GLB1L3 | galactosidase beta 1 like 3 | NM_001080407.3 | 46.6% | 45.4% | (many diffs) |
| 6 | human | 112937 | GLB1L3 | galactosidase beta 1 like 3 | XM_017017155.2 | 44.8% | 43.5% | (many diffs) |
| 7 | human | 112937 | GLB1L3 | galactosidase beta 1 like 3 | XM_011542567.2 | 44% | 42.1% | (many diffs) |
| 8 | human | 112937 | GLB1L3 | galactosidase beta 1 like 3 | XM_011542566.2 | 43.3% | 41.5% | (many diffs) |
| 9 | human | 112937 | GLB1L3 | galactosidase beta 1 like 3 | XM_011542568.2 | 41.6% | 39.8% | (many diffs) |
| 10 | human | 112937 | GLB1L3 | galactosidase beta 1 like 3 | XR_002957120.1 | 36.1% | (many diffs) | |
| 11 | human | 112937 | GLB1L3 | galactosidase beta 1 like 3 | XR_947791.2 | 31% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1005
- ORF length:
- 939
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgaa gtccccgccc ctcctcagcc cgtgtctctc ctggaagaga atggcgggca 121 tctttttcct gccatttatc tcatcaggtt ttgctcctcg gtttaagcag gaagagaact 181 tcatgcttgg aagagcgcat ccgtcccagc ctaggtttaa ttggtctcat ctgacccctc 241 tggagctgaa gaatcgatct gtgggacttg gaactgaaag cacaggtcgg ggtaagcccc 301 acttcacact ggagggccac aagttcctga tcttcggggg ctccatccac tatttccggg 361 tgcccaggga gtactggagg gaccgcctgc tgaagctgaa ggcctgtggc ttcaatactg 421 tcaccaccta tgttccgtgg aacctgcatg agccagaaag aggcaaattt gacttctctg 481 ggaacctgga cctggaggcc ttcgtcctga tggccgcaga gatcgggctg tgggtgattc 541 tgcgtccagg cccctacatc tgcagtgaga tggacctcgg gggcttgccc agctggctcc 601 tgcaagaccc ccggttactg ttgaggacaa ccaacaagag cttcattgaa gcagttgaga 661 agtattttga ccaccTGATT CCCAGAGTGA TTCCTCTCCA GTACCGCCAG GCAGGCCCTG 721 TCATCGCGGT GCAAGTGGAG AATGAGTATG GCTCATTCAA TAAGGATAAA ACATACATGC 781 CGTATCTCCA CAAGGCCCTG CTGAGAAGAG GGATTGTGGA GCTTCTCTTG ACCTCTGATG 841 GTGAGAAACA TGTGCTGAGT GGCCACACCA AAGGAGTGTT GGCCGCCATC AATTTGCAAA 901 AACTTCACCA GGATACTTTC AATCAGCTTC ATAAAGTCCA GGGAGCCAGT ATAGATGCAG 961 GACTGCTCTC AGATGCCTCA CAAGCAGCAA CTTCTTCCTC CTTATACCCA ACTTTCTTGT 1021 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 1081 AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 1141 GAAAGGACGA ATCCCGCCTT GATTGCCGCT GTTTACGCGT TAAGTCgaca atcaacctct 1201 ggattacaaa atttgtgaaa gatt