Construct: ORF TRCN0000472321

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006554.1_s317c1
Derived from:
ccsbBroadEn_16124
DNA Barcode:
CGTAAACGGGGCGCCCAGACCGTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CERS3 (204219)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472321
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 204219 CERS3 ceramide synthase 3 NM_001290342.2 99.5% 99.4% 159A>G;428_430delTAA;1108A>G
2 human 204219 CERS3 ceramide synthase 3 NM_001290343.2 99.5% 99.4% 159A>G;428_430delTAA;1108A>G
3 human 204219 CERS3 ceramide synthase 3 NM_178842.5 99.5% 99.4% 159A>G;428_430delTAA;1108A>G
4 human 204219 CERS3 ceramide synthase 3 XM_017022003.1 99.5% 99.4% 159A>G;428_430delTAA;1108A>G
5 human 204219 CERS3 ceramide synthase 3 XM_017022004.1 99.5% 99.4% 159A>G;428_430delTAA;1108A>G
6 human 204219 CERS3 ceramide synthase 3 NM_001290341.2 96.7% 96.7% (many diffs)
7 human 204219 CERS3 ceramide synthase 3 XM_011521355.2 96.7% 96.7% (many diffs)
8 human 204219 CERS3 ceramide synthase 3 XM_011521357.2 96.7% 96.7% (many diffs)
9 human 204219 CERS3 ceramide synthase 3 XM_011521358.1 96.7% 96.7% (many diffs)
10 human 204219 CERS3 ceramide synthase 3 XM_017022002.1 96.7% 96.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1212
ORF length:
1146
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtt ttggacgttt aaagaatggt tctggttgga aagattctgg cttcctccaa
121caataaagtg gtcagatctt gaggatcacg atggactcgt ctttgtaaaa ccttctcatt
181tatacgtgac aattccatat gcttttctct tgctgattat caggcgtgta tttgaaaaat
241ttgttgcttc acctctagca aaatcatttg gcattaaaga gacagttcga aaggttacac
301caaatactgt cttagagaat tttttcaaac attccacaag gcaaccattg caaactgata
361tttatggact ggcaaagaag tgtaacttga cggagcgcca ggtggaaaga tggtttagga
421gtcggcggaa tcaagagagg ccttccaggc tgaagaaatt ccaggaagct tgctggagat
481ttgcatttta cttgatcact gttgctggaa ttgcgtttct ttatgataaa ccttggctat
541atgacttatg ggaggtttgg aatggctatc ccaaacagcc cctgctgcca tcccagtact
601ggtactacat tttagaaatg agtttttatt ggtctctgtt atttagactt ggctttgatg
661tcaagagaaa ggattttcta gctcatatca tccaccacct ggctgctatt agtctgatga
721gcttctcttg gtgtgctaat tatattcgca gtgggaccct cgtgatgatt gtacacgatg
781tggctgacat ttggctggag tctgctaaga tgttttctta tgctGGATGG ACGCAGACCT
841GTAACACCCT GTTTTTCATC TTCTCCACCA TATTTTTCAT CAGCCGCCTC ATTGTTTTTC
901CTTTCTGGAT TTTATATTGC ACGCTGATCT TGCCTATGTA TCACCTCGAG CCTTTCTTTT
961CATACATCTT CCTCAACCTA CAGCTCATGA TCTTGCAGGT CCTTCACCTT TACTGGGGTT
1021ATTACATCTT GAAGATGCTC AACAGATGTA TATTCATGAA GAGCATCCAG GATGTGAGGA
1081GTGATGACGA GGATTATGAA GAGGAAGAGG AAGAGGAAGA AGAAGAGGCT ACCAAAGGCA
1141AAGAGATGGA TTGTTTAAAG AACGGCCTCG GGGCTGAGAG GCACCTCATT CCCAATGGCC
1201AGCATGGCCA TTACCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
1261ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
1321CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGACGT AAACGGGGCG CCCAGACCGT
1381CACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)