Construct: ORF TRCN0000472422

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012129.1_s317c1
Derived from:
ccsbBroadEn_14065
DNA Barcode:
AGGCCGGAGTGTTCCCAGATCCTT
Epitope Tag:
V5 (not translated due to frame shift)
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SEC23IP (11196)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472422
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11196 SEC23IP SEC23 interacting protein NM_007190.4 99.9% 99.6% 2986delG
2 human 11196 SEC23IP SEC23 interacting protein XM_005269469.3 99.8% 99.5% 2756_2757insAGC;2983delG
3 human 11196 SEC23IP SEC23 interacting protein XM_005269470.2 95% 94% (many diffs)
4 human 11196 SEC23IP SEC23 interacting protein XM_017015610.1 94.9% 93.9% (many diffs)
5 human 11196 SEC23IP SEC23 interacting protein XR_246061.2 68.9% 1_87del;3073delG;3088_4352del
6 human 11196 SEC23IP SEC23 interacting protein XR_002956945.1 39.5% (many diffs)
7 human 11196 SEC23IP SEC23 interacting protein NR_037771.2 34.4% (many diffs)
8 mouse 207352 Sec23ip Sec23 interacting protein NM_001029982.2 84.8% 86% (many diffs)
9 mouse 207352 Sec23ip Sec23 interacting protein XM_006507519.3 84.7% 85.9% (many diffs)
10 mouse 207352 Sec23ip Sec23 interacting protein XM_006507521.2 65.8% 67.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3066
ORF length:
3000
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc cgagagaaaa cctaacggtg gcagcggcgg cgcctccact tcctcatcgg
121gcactaactt acttttctcc tcctcggcca cggagttcag cttcaatgtg cccttcatcc
181cagtcaccca ggcctccgct tctccggcct ccctgctctt accgggagag gattccacag
241atgttggtga ggaggacagc ttccttggtc agacttctat tcacacatct gccccacaga
301catttagtta cttctctcag gtatcaagca gcagtgatcc ttttgggaat attggacagt
361caccattaac aactgcagca acctcagttg gacaatcagg attccccaag cccctgactg
421ctctcccttt tacaactgga tcccaagatg tctcgaatgc attttcacca tccatttcga
481aggctcaacc tggtgctcca ccttcctcac tgatgggaat aaattcttat ctgccttctc
541agccaagtag tctccctcct tcatattttg ggaaccaacc ccaaggaatt ccccaaccag
601gatacaatcc atatcgccat acccctggca gcagcagggc taatccttac attgcaccac
661cccagctgca gcagtgccaa acaccaggcc ctcctgctca tcctccacct tctggacccc
721ctgttcagat gtaccagatg cctccaggat ctttgccacc ggttccttct tcagtgcagt
781caccggcaca gcagcaggta cctgccagac ctggggctcc ctctgttcaa gtgccatctc
841cttttctact tcaaaaccaa tatgagcctg ttcagcccca ctggttttac tgcaaggagg
901tagaatacaa acaactgtgg atgcctttta gtgtgttcga ctctttgaat cttgaagaaa
961tctataattc agttcagcca gatccggaga gcgtggttct tggcacggat ggagggcgct
1021acgatgttta cctctatgac cgaataagga aggctgccta ctgggaagag gagccagccg
1081aagtgagacg ctgtacttgg ttttacaagg gggacacaga tagtcgattt attccctata
1141ctgaggagtt cagtgaaaaa ctagaggctg aatataaaaa agctgtaacc actaatcagt
1201ggcaccgaag attagagttt ccaagtggag agacaattgt tatgcacaat ccaaaggtta
1261ttgttcagtt ccagccctcc tcagtgccag atgaatgggg caccacgcaa gatggacaga
1321caaggcccag ggttgtaaag cgtggaattg atgataacct tgatgaaatt cccgacgggg
1381agatgcctca agttgaccat ttggtgtttg tggtgcatgg cattggacct gtgtgtgact
1441tacgctttag gagcattatt gagtgtgtgg atgattttag ggtggtttct ctcaaattgc
1501tgcggacaca tttcaagaaa tctttagatg acgggaaagt aagcagagtg gagttccttc
1561cagttcattg gcatagttct ttgggtgggg acgccacagg tgtggacagg aatattaaga
1621aaatcacttt gccaagtatt ggtcgatttc gtcactttac caatgaaact ttgctagata
1681ttttatttta taacagcccc acctactgtc agacaattgt ggaaaaagta ggaatggaga
1741taaaccatct gcatgcactc tttatgagtc ggaacccaga cttcaaagga ggtgtctctg
1801ttgctggtca cagtttaggt tctttaatat tgtttgacat cctgtctaat caaaaagatt
1861tgaatttatc aaagtgccct ggacctcttg ctgttgctaa tggagttgtg aagcagctac
1921attttcagga aaagcagatg cctgaagagc caaagctgac tttggatgag tcgtatgacc
1981ttgttgttga aaataaagaa gtcctaactt tgcaagaaac tctggaagca cttagcctct
2041ctgaatattt tagcactttt gaaaaggaaa agattgatat ggagtccctg cttatgtgta
2101cagttgatga cctgaaggaa atggggatac cccttggacc cagaaagaag atagctaact
2161ttgtagaaca taaagcagcc aaactgaaaa aagcagcgtc agaaaagaag gcagtggcgg
2221ccacttctac aaaaggacaa gagcaaagtg cccagaagac taaagacatg gcttccctcc
2281cctcagaatc caatgagcca aagaggaaac ttccagttgg tgcttgcgtg tcttctgtgt
2341gtgtgaatta tgaatctttt gaagttggcg ccggacaggt ttctgttgct tacaactcat
2401tagattttga accagagata ttctttgcct tggggtctcc aattgctatg tttctcacta
2461ttcgaggagt tgataggata gatgagaatt acagccttcc tacctgtaaa gggttcttca
2521atatttatca tccgcttgat ccagtggcat atagattaga acctatgatt gttccagatt
2581tggacctaaa agctgttctc attccacatc acaaaggcag aaaaagactt catttagaat
2641tgaaagagag tctctctcgt atgggatctg atttgaagca gggTTTTATT AGCTCTCTCA
2701AAAGTGCTTG GCAGACATTA AATGAGTTTG CCCGTGCTCA TACGTCTTCA ACCCAGTTGC
2761AAGAAGAATT GGAGAAGGTG GCCAATCAGA TCAAAGAAGA AGAAGAAAAG CAAGTAGTTG
2821AAGCAGAAAA GGTTGTTGAA AGTCCAGATT TTTCCAAGGA TGAGGACTAC TTAGGAAAGG
2881TTGGAATGTT AAATGGAGGC CGCCGAATTG ACTACGTTCT CCAAGAAAAA CCAATAGAGA
2941GTTTTAATGA ATACCTTTTC GCTCTTCAGA GTCACTTATG CTATTGGGAA TCTGAAGATA
3001CTGCTCTGTT ACTACTTAAA GAAATTTATC GAACAATGAA CATTAGTCCA AACAGCCCCA
3061GCATTGCCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT
3121CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC
3181TTGGCTTTAT ATATCTTGTG GAAAGGACGA AGGCCGGAGT GTTCCCAGAT CCTTACGCGT
3241TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)

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