Construct: ORF TRCN0000472508
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000415.1_s317c1
- Derived from:
- ccsbBroadEn_07159
- DNA Barcode:
- GGTGATACTGCGAACGACAATGGC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF75D (7626)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000472508
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7626 | ZNF75D | zinc finger protein 75D | NM_007131.5 | 99.9% | 100% | 1434G>A |
| 2 | human | 7626 | ZNF75D | zinc finger protein 75D | NM_001185063.2 | 81.3% | 81.3% | 410_411ins285;1149G>A |
| 3 | human | 7626 | ZNF75D | zinc finger protein 75D | XM_024452442.1 | 71.3% | 55.3% | 0_1ins346;257_258ins92;996G>A |
| 4 | human | 7626 | ZNF75D | zinc finger protein 75D | XM_017029819.2 | 71.1% | 56.2% | (many diffs) |
| 5 | human | 7626 | ZNF75D | zinc finger protein 75D | XM_011531395.3 | 69.9% | 57.4% | (many diffs) |
| 6 | human | 7626 | ZNF75D | zinc finger protein 75D | XM_011531396.3 | 66.9% | 67% | 0_1ins504;930G>A |
| 7 | human | 7626 | ZNF75D | zinc finger protein 75D | XM_011531397.3 | 66.4% | 55.9% | 0_1ins421;182_183ins92;921G>A |
| 8 | human | 7626 | ZNF75D | zinc finger protein 75D | XM_017029820.2 | 66.4% | 55.9% | 0_1ins421;182_183ins92;921G>A |
| 9 | human | 7626 | ZNF75D | zinc finger protein 75D | XM_005262471.3 | 59.3% | 59.4% | 0_1ins621;813G>A |
| 10 | human | 7626 | ZNF75D | zinc finger protein 75D | XM_024452443.1 | 48.3% | 48.4% | 0_1ins789;645G>A |
| 11 | human | 7626 | ZNF75D | zinc finger protein 75D | XM_024452444.1 | 48.3% | 48.4% | 0_1ins789;645G>A |
| 12 | human | 7626 | ZNF75D | zinc finger protein 75D | XM_024452445.1 | 48.3% | 48.4% | 0_1ins789;645G>A |
| 13 | human | 7627 | ZNF75A | zinc finger protein 75a | NM_153028.3 | 40% | 35.8% | (many diffs) |
| 14 | human | 7627 | ZNF75A | zinc finger protein 75a | XM_011522647.2 | 40% | 35.8% | (many diffs) |
| 15 | human | 7626 | ZNF75D | zinc finger protein 75D | XM_024452446.1 | 39.7% | 39.8% | 0_1ins921;513G>A |
| 16 | human | 7627 | ZNF75A | zinc finger protein 75a | NM_001352495.1 | 30.2% | 28.4% | (many diffs) |
| 17 | human | 7627 | ZNF75A | zinc finger protein 75a | NM_001352497.1 | 30.2% | 28.4% | (many diffs) |
| 18 | human | 7627 | ZNF75A | zinc finger protein 75a | NM_001352498.1 | 30.2% | 28.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1599
- ORF length:
- 1530
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggcgatgaga gagctgaacg cggattcatg ctcaagcccc cagatggggg 121 ctatgtggga gactagtggg tctgtgaaag agaactccag tcagagtaag aaatacagca 181 caaaaataga gaatcttggt cctgagagcg cttgcaggca cttctggagc ttccgttatc 241 atgaagcaac cggaccgctt gagactatca gccaacttca gaaattgtgc catcagtggc 301 tgaggccaga gatccactca aaagagcaga tcttggaaat gctggtgtta gagcagttcc 361 tgagcattct gcccaaggag acccagaact gggtgcagaa gcatcatcca cagaatgtca 421 aacaggctct ggtcctggtg gaattcttgc agagggagcc tgatggaaca aagaatgagg 481 tcacagccca tgagctggga aaggaggcag tgctcttggg aggaacagca gtggccccag 541 gcttcaagtg gaagccagca gagccccaac caatgggtgt gttccagaaa gaatattgga 601 atacataccg ggtactacaa gaacagctgg gctggaacac tcacaaagaa acccagcctg 661 tatatgaaag agctgtgcat gatcaacaga tgttagccct ttctgagcag aaaagaatca 721 aacactggaa gatggcatct aaactcatcc tgcctgagtc cctgagtttg ttgacatttg 781 aagatgtggc tgtgtatttt tctgaggaag agtggcaatt attgaatcct cttgagaaga 841 ctctctacaa tgatgtaatg caggatatct atgagactgt catctctcta gggttaaagc 901 taaaaaatga cactggaaat gatcatccta tatctgtttc tacatcagaa atacaaacat 961 caggatgcga agtatcaaaa aagaccagaa tgaaaattgc ccagaaaaca atgggcaggg 1021 aaaatcctgg tgatacacac agtgtacaga aatggcatcg agcttttcca aggaagaaaa 1081 gaaagaaacc tgcaacttgt aaacaagagc ttccaaaact tatggatctt catgggaaag 1141 gCCCCACAGG GGAGAAACCT TTTAAGTGTC AGGAATGTGG GAAAAGCTTC AGAGTTAGCT 1201 CTGATCTTAT TAAACACCAC AGAATTCACA CTGGAGAGAA ACCCTATAAA TGTCAACAAT 1261 GTGACAGGAG GTTTAGATGG AGTTCAGATC TTAATAAGCA CTTCATGACC CATCAAGGAA 1321 TAAAACCATA TAGATGCTCA TGGTGTGGGA AAAGCTTTAG TCATAACACA AATCTACACA 1381 CACACCAAAG AATTCACACA GGAGAGAAGC CCTTTAAATG TGATGAATGT GGAAAAAGAT 1441 TCATTCAGAA CTCCCACCTT ATTAAACACC AGAGAACTCA CACAGGTGAG CAGCCTTATA 1501 CATGTAGCTT ATGCAAGAGA AACTTTAGTA GGCGATCGAG CCTTCTTAGA CACCAGAAAC 1561 TCCACAGAAG AAGGGAAGCA TGTCTAGTGT CTCCAAACTT GCCAACTTTC TTGTACAAAG 1621 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 1681 GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG 1741 ACGAGGTGAT ACTGCGAACG ACAATGGCAC GCGTTAAGTC gacaatcaac ctctggatta 1801 caaaatttgt gaaagatt