Transcript: Human XM_011531395.3

PREDICTED: Homo sapiens zinc finger protein 75D (ZNF75D), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF75D (7626)
Length:
5238
CDS:
2810..3892

Additional Resources:

NCBI RefSeq record:
XM_011531395.3
NBCI Gene record:
ZNF75D (7626)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011531395.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000107642 CGTGTAGCTTATGCAAGAGAA pLKO.1 3792 CDS 100% 4.950 6.930 N ZNF75D n/a
2 TRCN0000107640 CCCATCTTTATGGCTGATCAA pLKO.1 4767 3UTR 100% 4.950 3.960 N ZNF75D n/a
3 TRCN0000218023 CATGACCCATCAAGGAATAAA pLKO_005 3595 CDS 100% 15.000 10.500 N ZNF75D n/a
4 TRCN0000229309 TGAGGAAGAGTGGCAATTATT pLKO_005 3094 CDS 100% 15.000 10.500 N ZNF75D n/a
5 TRCN0000229312 GATCAACTACAACCCTATATG pLKO_005 4782 3UTR 100% 13.200 9.240 N ZNF75D n/a
6 TRCN0000107644 TCTGAGGAAGAGTGGCAATTA pLKO.1 3092 CDS 100% 13.200 9.240 N ZNF75D n/a
7 TRCN0000229311 TGGAAATGATCATCCTATATC pLKO_005 3205 CDS 100% 13.200 9.240 N ZNF75D n/a
8 TRCN0000107641 GCTGGAACACTCACAAAGAAA pLKO.1 3014 CDS 100% 5.625 3.938 N ZNF75D n/a
9 TRCN0000107643 GCAACTTGTAAACAAGAGCTT pLKO.1 3383 CDS 100% 2.640 1.848 N ZNF75D n/a
10 TRCN0000218427 ACTGGAGAGAAACCCTATAAA pLKO_005 3521 CDS 100% 15.000 7.500 Y ZNF443 n/a
11 TRCN0000374174 ACTGGAGAGAAACCCTATAAA pLKO_005 3521 CDS 100% 15.000 7.500 Y Zfp97 n/a
12 TRCN0000229310 TGTCATCTCTCTAGGGTTAAA pLKO_005 3169 CDS 100% 13.200 6.600 Y ZNF75D n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011531395.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07159 pDONR223 100% 69.9% 57.4% None (many diffs) n/a
2 TRCN0000472508 GGTGATACTGCGAACGACAATGGC pLX_317 30.1% 69.9% 57.4% V5 (many diffs) n/a
3 ccsbBroadEn_01805 pDONR223 100% 54.9% 49.3% None (many diffs) n/a
4 ccsbBroad304_01805 pLX_304 0% 54.9% 49.3% V5 (many diffs) n/a
5 TRCN0000474225 AATACCATGACCAACAATAAGCCC pLX_317 52% 54.9% 49.3% V5 (many diffs) n/a
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