Construct: ORF TRCN0000472521

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010683.1_s317c1
Derived from:
ccsbBroadEn_03563
DNA Barcode:
TCGCCTAACAACGGCCTAGTCTGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCMTD2 (55251)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472521
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55251 PCMTD2 protein-L-isoaspartate (D-a... NM_018257.3 100% 100%
2 human 55251 PCMTD2 protein-L-isoaspartate (D-a... NM_001104925.1 92.5% 92.5% 580_581ins81
3 mouse 245867 Pcmtd2 protein-L-isoaspartate (D-a... NM_153594.3 84.3% 90.8% (many diffs)
4 mouse 245867 Pcmtd2 protein-L-isoaspartate (D-a... NM_001291211.1 65.1% 50% (many diffs)
5 mouse 245867 Pcmtd2 protein-L-isoaspartate (D-a... XM_006500622.3 64.2% 65.4% (many diffs)
6 mouse 245867 Pcmtd2 protein-L-isoaspartate (D-a... XM_006500626.3 57.9% 63.1% (many diffs)
7 mouse 245867 Pcmtd2 protein-L-isoaspartate (D-a... XM_006500627.3 57.7% 62.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1149
ORF length:
1083
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg cggtgctgtg agtgctggtg aagacaatga tgagctgata gataatttga
121aagaagcaca gtatatccgg actgagctgg tagagcaggc tttcagagct atcgatcgtg
181cagactatta tcttgaagaa tttaaagaaa atgcttataa agacttggca tggaagcatg
241gaaacattca cctctcagcc ccgtgcatct actcggaggt gatggaagcc ctagatctgc
301agcctggact ctcgtttctg aacctgggca gtggcactgg gtatctcagc tccatggtgg
361gcctcattct aggtcctttt ggtgtgaacc atggggtgga acttcactca gatgtgatag
421agtatgcaaa gcagaaactg gacttcttca tcagaacaag tgatagtttt gacaagtttg
481acttctgtga accttccttt gttactggga attgcctgga gatttctccg gattgttctc
541agtatgatcg tgtatactgt ggggctggcg tgcagaaaga gcatgaagag tacatgaaga
601atcttctcaa agtgggaggg atccttgtca tgccactgga agagaagttg actaagataa
661cacgcacagg tccttcagct tgggaaacca aaaagattct tgctgtttct tttgctcctc
721tgatccagcc cTGCCATTCA GAGTCAGGAA AATCAAGACT TGTCCAGTTA CCACCAGTGG
781CAGTTCGCAG CCTCCAGGAC TTGGCTCGCA TCGCCATCCG GGGCACCATT AAAAAGATTA
841TTCATCAGGA AACTGTGAGC AAAAACGGAA ACGGACTAAA GAACACCCCC AGGTTTAAAC
901GAAGGAGAGT TCGCCGCCGT CGAATGGAAA CGATTGTCTT TTTGGACAAA GAAGTCTTTG
961CCAGTCGGAT TTCCAACCCC TCAGATGACA ACAGCTGTGA AGACTTGGAA GAGGAACGGA
1021GGGAAGAAGA AGAGAAGACC CCGCCGGAAA CAAAGCCAGA CCCCCCAGTG AACTTCCTAC
1081GCCAGAAGGT CCTGAGCCTC CCTCTGCCAG ATCCCCTGAA ATACTACTTG CTTTATTACA
1141GAGAAAAATA CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1201CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
1261TTTCTTGGCT TTATATATCT TTGTGGAAAG GACGATCGCC TAACAACGGC CTAGTCTGCA
1321CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)