Construct: ORF TRCN0000472525

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016952.1_s317c1
Derived from:
ccsbBroadEn_13504
DNA Barcode:
AGTACTGAGGTTTATGTCAATTTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TEDC1 (283643)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472525
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 283643 TEDC1 tubulin epsilon and delta c... NM_001134877.1 67.5% 61.6% (many diffs)
2 human 283643 TEDC1 tubulin epsilon and delta c... NM_001198983.1 67.1% 61.3% (many diffs)
3 human 283643 TEDC1 tubulin epsilon and delta c... NM_001134876.1 60.5% 55.3% (many diffs)
4 human 283643 TEDC1 tubulin epsilon and delta c... NM_001134875.1 58.2% 58.2% 1_378del;428_583del
5 human 283643 TEDC1 tubulin epsilon and delta c... NM_001367178.1 50.1% 50.1% 1_378del;428_583del;684_890del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
810
ORF length:
744
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgct ggcccaggcc cgagtgcctc tgggtgacga gatgactgtg tgccagatcc
121acctgtacac acgcggctgc cacagcgacc agagccttag ccatctgtct gtcactgaag
181cagagatgct cagggaccca gagggaggcc agcagctgct gcggactctg gagcgtgaga
241accagcgcct ggaggctgtc ctggcgtggc ggcgctctga gctggtcttc tggcggtgga
301tggacacggt cctgggcacc tgtgccccgg aggtgcctgc tgcagcctca cagcccacct
361tcctgcccTG GGTCCCCGAG CGCGGGGGTG GCGAGTTGGA CCTGGTAGTG CGGGAGCTGC
421AGGCACTGGA GGAGGAGCTG CGGGAGGCTG CGGAGCGCAG GCGGGCGGCC TGGGAGGCCA
481AGGCTGGAGG CTGTGGACGG GGGCCAGAGT GGAGTGCCGC GCGGCGGGCC TCTCGGGAGG
541CTGTGGAAAA GGAGCTGGGA GCTCTACAGC AGTGCTGGGA GCGAGACGGT GGCCCGGCCC
601AGCCCCATGG GCCACACCGG CTGGTGAGAC GAGAGGATGG GGCAGCAGGG GACCGGGACC
661TGCGGGCAGC TGTGGTGATC AGGACGCTGA GGAGCCAGGA GGCCTGCCTG GAGGCGGTGC
721TACGTCGACT ACAGGGACAG TGTCGGCAGG AACTGGCCAG GCTGGTGGGA GCCCGCCCTG
781GTCTCATCTG GATCCCGCCA CCTGGACGCT GCCCAACTTT CTTGTACAAA GTGGTTGATA
841TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
901CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGAAGTAC
961TGAGGTTTAT GTCAATTTAA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
1021tgaaagatt

Download FASTA (ORF) (Full)