Construct: ORF TRCN0000472567

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015871.1_s317c1
Derived from:
ccsbBroadEn_05052
DNA Barcode:
ATTTTCGCTCTCGAAACGAACCTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UPP2 (151531)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472567
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 151531 UPP2 uridine phosphorylase 2 NM_173355.3 100% 100%
2 human 151531 UPP2 uridine phosphorylase 2 XM_005246359.3 86.9% 85% (many diffs)
3 human 151531 UPP2 uridine phosphorylase 2 NM_001135098.1 84.7% 84.7% 1_171del
4 human 151531 UPP2 uridine phosphorylase 2 XM_017003484.1 80.4% 71% (many diffs)
5 human 151531 UPP2 uridine phosphorylase 2 XR_922881.2 69.4% 1_194del;1003_1126del;1199_1200ins70
6 human 151531 UPP2 uridine phosphorylase 2 XR_922880.2 34% 1_194del;1005_1567del;1709_2790del
7 human 151531 UPP2 uridine phosphorylase 2 XR_001738652.1 33.2% 1_194del;1005_1638del;1780_2861del
8 mouse 76654 Upp2 uridine phosphorylase 2 NM_029692.3 85.3% 86.8% (many diffs)
9 mouse 76654 Upp2 uridine phosphorylase 2 XM_006498409.3 85.3% 86.8% (many diffs)
10 mouse 76654 Upp2 uridine phosphorylase 2 XM_006498410.4 85.3% 86.8% (many diffs)
11 mouse 76654 Upp2 uridine phosphorylase 2 XM_030252193.1 85.3% 86.8% (many diffs)
12 mouse 76654 Upp2 uridine phosphorylase 2 NM_001289659.1 80.9% 82.2% (many diffs)
13 mouse 76654 Upp2 uridine phosphorylase 2 XM_006498407.4 76.2% 77.6% (many diffs)
14 mouse 76654 Upp2 uridine phosphorylase 2 XM_006498406.4 72.9% 74.3% (many diffs)
15 mouse 76654 Upp2 uridine phosphorylase 2 XM_011239207.2 72.9% 74.3% (many diffs)
16 mouse 76654 Upp2 uridine phosphorylase 2 XR_866022.2 62.7% (many diffs)
17 mouse 76654 Upp2 uridine phosphorylase 2 XM_011239206.3 52.6% 54% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1017
ORF length:
951
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ttcagttata cctgcctcca ataggtccat gagatctgac aggaatacat
121atgttggaaa aaggtttgtt cacgttaaaa atccttactt ggatttgatg gatgaagaca
181ttctctatca cttggatttg ggaacaaaaa cacacaacct accagcaatg tttggagatg
241taaagtttgt ctgtgtcggt gggagcccca acagaatgaa agcatttgca ctgtttatgc
301acaaggagct cgggtttgag gaagctgaag aagacataaa agacatctgt gctgggacag
361acagatactg tatgtacaaa accgggcctg tgctcgccat cagtcacggc atgggcatcc
421cctccatttc tattatgctt catgaactca tcaaattact ccaccatgca cggtgctgcg
481atgtcaccat tattagaatc ggtacatcag ggggaatagg gattgcacca gggactgttg
541taataacgga tatagctgta gactccttct ttaagccccg gtttgaacag gtcattttgg
601acaacattgt cacccGAAGT ACTGAACTGG ACAAAGAACT GTCTGAAGAA CTGTTCAACT
661GTAGCAAAGA AATCCCCAAC TTCCCAACCC TCGTTGGACA TACAATGTGT ACCTATGATT
721TTTATGAAGG CCAAGGCCGA CTAGATGGAG CACTGTGCTC CTTTTCCAGA GAAAAAAAGT
781TAGACTACTT GAAGAGAGCA TTTAAAGCTG GTGTCAGGAA TATTGAAATG GAATCTACAG
841TGTTTGCAGC TATGTGTGGA CTCTGTGGTC TAAAAGCTGC TGTGGTCTGT GTGACACTTC
901TCGACAGACT CGACTGTGAT CAGATCAACT TGCCTCATGA TGTCCTGGTG GAGTACCAGC
961AACGGCCTCA GCTCCTAATC TCCAACTTCA TCAGACGGCG GCTTGGACTT TGTGACTACC
1021CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1081TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1141ATATATCTTG TGGAAAGGAC GAATTTTCGC TCTCGAAACG AACCTGACGC GTTAAGTCga
1201caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)