Construct: ORF TRCN0000472771

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017735.1_s317c1
Derived from:
ccsbBroadEn_08994
DNA Barcode:
ATTAAATATTACGGAAAGGTGGGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SYNDIG1 (79953)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472771
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79953 SYNDIG1 synapse differentiation ind... NM_001323606.1 99.8% 100% 339C>A
2 human 79953 SYNDIG1 synapse differentiation ind... NM_001323607.1 99.8% 100% 339C>A
3 human 79953 SYNDIG1 synapse differentiation ind... NM_024893.3 99.8% 100% 339C>A
4 human 79953 SYNDIG1 synapse differentiation ind... XM_017028065.1 99.8% 100% 339C>A
5 human 79953 SYNDIG1 synapse differentiation ind... XM_017028066.2 99.8% 100% 339C>A
6 human 79953 SYNDIG1 synapse differentiation ind... XM_017028067.2 99.8% 100% 339C>A
7 human 79953 SYNDIG1 synapse differentiation ind... XM_017028068.1 99.8% 100% 339C>A
8 human 79953 SYNDIG1 synapse differentiation ind... XM_011529356.3 83.6% 79.7% (many diffs)
9 human 79953 SYNDIG1 synapse differentiation ind... XM_011529347.3 82.9% 77.5% (many diffs)
10 human 79953 SYNDIG1 synapse differentiation ind... XM_011529348.3 82.9% 77.5% (many diffs)
11 human 79953 SYNDIG1 synapse differentiation ind... XM_011529349.3 82.9% 77.5% (many diffs)
12 human 79953 SYNDIG1 synapse differentiation ind... XM_011529350.1 82.9% 77.5% (many diffs)
13 human 79953 SYNDIG1 synapse differentiation ind... XM_011529351.1 82.9% 77.5% (many diffs)
14 human 79953 SYNDIG1 synapse differentiation ind... XM_011529352.2 82.9% 77.5% (many diffs)
15 human 79953 SYNDIG1 synapse differentiation ind... XM_011529353.2 82.9% 77.5% (many diffs)
16 human 79953 SYNDIG1 synapse differentiation ind... XM_011529354.2 82.9% 77.5% (many diffs)
17 human 79953 SYNDIG1 synapse differentiation ind... XM_017028064.1 82.9% 77.5% (many diffs)
18 human 79953 SYNDIG1 synapse differentiation ind... XM_011529358.3 79.7% 79.8% 339C>A;618_619ins156
19 human 79953 SYNDIG1 synapse differentiation ind... XM_017028069.2 61.8% 62% 339C>A;480_481ins294
20 human 79953 SYNDIG1 synapse differentiation ind... XR_937144.3 28.7% (many diffs)
21 human 79953 SYNDIG1 synapse differentiation ind... NR_147606.1 26.9% (many diffs)
22 mouse 433485 Syndig1 synapse differentiation ind... NM_001085521.2 87.7% 93% (many diffs)
23 mouse 433485 Syndig1 synapse differentiation ind... XM_006499874.3 87.7% 93% (many diffs)
24 mouse 433485 Syndig1 synapse differentiation ind... XM_011239685.2 87.7% 93% (many diffs)
25 mouse 433485 Syndig1 synapse differentiation ind... XM_011239687.2 87.7% 93% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
840
ORF length:
774
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga tggcatcatt gaacagaaga gcatgctggt gcacagtaaa atcagtgatg
121ctggcaagag gaatggttta attaacacca gaaacttgat ggccgagagc agagatggtc
181tggtgtctgt ttacccagcg ccccagtacc agagccaccg ggtgggggcc agcacagtgc
241cggccagcct ggacagcagc aggagtgagc cgatgcagca gctgctggac cccaacaccc
301tgcagcagtc agtggagtcc cgctaccggc ccaacatcaT CCTCTATTCA GAGGGCGTGC
361TGCGCTCCTG GGGGGACGGT GTGGCCGCCG ACTGCTGCGA GACAACCTTC ATCGAGGACC
421GGTCGCCCAC CAAAGACAGC CTCGAGTACC CGGATGGGAA GTTCATTGAC CTCTCAGCTG
481ATGACATAAA AATCCACACC CTGTCCTACG ATGTGGAGGA GGAGGAGGAG TTCCAGGAGC
541TGGAGAGCGA CTACTCAAGC GACACAGAGA GTGAGGACAA TTTCCTCATG ATGCCCCCGC
601GGGACCACCT GGGCCTCAGT GTCTTCTCCA TGCTCTGCTG CTTCTGGCCT CTGGGCATCG
661CAGCCTTCTA CTTGTCCCAT GAGACCAACA AAGCCGTGGC CAAGGGGGAC TTGCACCAGG
721CCAGCACCAG CTCCCGGCGG GCCCTATTCC TGGCAGTGCT GTCCATCACC ATTGGGACTG
781GCGTCTATGT GGGCGTGGCC GTGGCCCTCA TCGCCTACCT CTCCAAGAAC AACCACCTGT
841GCCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
901GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
961TTTATATATC TTGTGGAAAG GACGAATTAA ATATTACGGA AAGGTGGGAA CGCGTTAAGT
1021Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)