Construct: ORF TRCN0000472780
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004354.1_s317c1
- Derived from:
- ccsbBroadEn_12616
- DNA Barcode:
- CCTAACGTGGAAGGAAAGCCTGCG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC82 (79780)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000472780
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79780 | CCDC82 | coiled-coil domain containi... | NM_001318737.3 | 99.9% | 99.7% | 445C>G |
| 2 | human | 79780 | CCDC82 | coiled-coil domain containi... | XM_017018310.1 | 63.3% | 61.6% | (many diffs) |
| 3 | human | 79780 | CCDC82 | coiled-coil domain containi... | XM_024448693.1 | 63.3% | 61.6% | (many diffs) |
| 4 | human | 79780 | CCDC82 | coiled-coil domain containi... | XM_024448694.1 | 63.3% | 61.6% | (many diffs) |
| 5 | human | 79780 | CCDC82 | coiled-coil domain containi... | NM_001318736.1 | 62.5% | 60.8% | (many diffs) |
| 6 | human | 79780 | CCDC82 | coiled-coil domain containi... | NM_024725.4 | 62.5% | 60.8% | (many diffs) |
| 7 | human | 79780 | CCDC82 | coiled-coil domain containi... | XM_005274292.3 | 62.5% | 60.8% | (many diffs) |
| 8 | human | 79780 | CCDC82 | coiled-coil domain containi... | XM_011542984.3 | 62.5% | 60.8% | (many diffs) |
| 9 | human | 79780 | CCDC82 | coiled-coil domain containi... | XM_011542987.3 | 62.5% | 60.8% | (many diffs) |
| 10 | human | 79780 | CCDC82 | coiled-coil domain containi... | XM_011542988.3 | 62.5% | 60.8% | (many diffs) |
| 11 | human | 79780 | CCDC82 | coiled-coil domain containi... | XM_017018307.1 | 62.5% | 60.8% | (many diffs) |
| 12 | human | 79780 | CCDC82 | coiled-coil domain containi... | XM_024448690.1 | 62.5% | 60.8% | (many diffs) |
| 13 | human | 79780 | CCDC82 | coiled-coil domain containi... | XM_024448691.1 | 62.5% | 60.8% | (many diffs) |
| 14 | human | 79780 | CCDC82 | coiled-coil domain containi... | XM_024448692.1 | 62.5% | 60.8% | (many diffs) |
| 15 | human | 79780 | CCDC82 | coiled-coil domain containi... | NM_001363594.1 | 58.3% | 56.8% | (many diffs) |
| 16 | human | 79780 | CCDC82 | coiled-coil domain containi... | XM_006718911.4 | 58.3% | 56.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1098
- ORF length:
- 1032
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgat acatgttaga agacatgaaa caaggagaaa ttctaagagt cacgtgcctg 121 agcagaaatc tcgagttgat tggaggcgaa ctaaaagaag tagtatctca caattacttg 181 atagtgatga agagcttgat agtgaagaat ttgatagtga tgaagagctt gatagtgatg 241 aaagttttga aaatgatgaa gagcttgata gtaacaaggg acctgattgt aataaaacac 301 caggaagtga aagagagctc aacttaagta aaattcaaag tgaaggaaat gacagtaagt 361 gtctcattaa ctctggcaac ggttcaacat atgaagaaga aacgaacaaa atcaaacata 421 ggaatattga cttacaagat caggaaaaac atttaagtca agaggataat gatctcaaca 481 aacaaactgg acaaataata gaggatgatg aggaaaaaca tttaagtcaa gaggataatg 541 atctcaacaa acaaactGGA CAAATAATAG AGGATGATTT AGAAGAAGAA GACATCAAGC 601 GAGGAAAAAG AAAAAGGCTA TCCTCTGTGA TGTGTGACAG TGATGAGAGT GATGACAGCG 661 ATATCCTAGT TAGAAAAGTA GGTGTTAAAC GTCCCCGTAG AGTGGTTGAA GATGAAGGTT 721 CTTCAGTGGA AATGGAGCAA AAGACTCCTG AAAAAACATT AGCTGCACAA AAGCGAGAAA 781 AACTTCAGAA GCTCAAAGAA CTCTCAAAAC AAAGATCTCG TCAGAGACGC AGTAGTGGTA 841 GAGATTTTGA GGACTCTGAA AAGGAATCTT GCCCAAGCAG TGATGAAGTT GATGAGGAGG 901 AAGAAGAGGA TAATTATGAA TCTGATGAAG ATGGAGATGA TTATATTATC GATGACTTTG 961 TAGTGCAAGA TGAGGAGGGT GATGAAGAGA ATAAAAACCA ACAAGGAGAA AAATTGACTA 1021 CATCACAACT GAAATTAGTA AAACAGAATT CTCTTTGTAA GTTCAATATT AAGAAAATGT 1081 TTCATGAATT GTTCTCATGC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA 1141 TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA 1201 GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGACCTAACG TGGAAGGAAA 1261 GCCTGCGACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt