Construct: ORF TRCN0000472912

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005276.1_s317c1
Derived from:
ccsbBroadEn_13066
DNA Barcode:
TCACCCCCCAAACTAAGCGAGGAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RFFL (117584)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472912
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 117584 RFFL ring finger and FYVE like d... NM_001017368.2 89.9% 89.8% 380A>G;589_672del;886_909del
2 human 117584 RFFL ring finger and FYVE like d... NR_037713.2 13.6% (many diffs)
3 mouse 67338 Rffl ring finger and FYVE like d... NM_026097.3 87.5% 88.3% (many diffs)
4 mouse 67338 Rffl ring finger and FYVE like d... NM_001164571.1 87.2% 88% (many diffs)
5 mouse 67338 Rffl ring finger and FYVE like d... NM_001007465.3 80.7% 81.5% (many diffs)
6 mouse 67338 Rffl ring finger and FYVE like d... XM_006533988.2 80.7% 81.5% (many diffs)
7 mouse 67338 Rffl ring finger and FYVE like d... XM_006533989.2 80.7% 81.5% (many diffs)
8 mouse 67338 Rffl ring finger and FYVE like d... XM_006533990.2 80.7% 81.5% (many diffs)
9 mouse 67338 Rffl ring finger and FYVE like d... XM_006533987.2 79.2% 80% (many diffs)
10 mouse 67338 Rffl ring finger and FYVE like d... NM_001164570.1 77.7% 78.5% (many diffs)
11 mouse 67338 Rffl ring finger and FYVE like d... NM_001164569.1 73.6% 74.3% (many diffs)
12 mouse 67338 Rffl ring finger and FYVE like d... XM_017314715.1 73.6% 74.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1047
ORF length:
981
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtg ggcaacctgc tgcaactggt tctgcctgga tggacagcct gaggaggtcc
121caccacccca gggagccagg atgcaggcct attccaaccc tgggtacagc tccttccctt
181ccccaacagg cttggaacca agctgcaagt cctgtggggc tcactttgca aacacggcca
241ggaagcagac ctgcttggac tgtaagaaaa atttttgcat gacctgttcg agccaagtag
301ggaatgggcc ccgcctctgc cttctctgcc aacggtttcg agctacagcc tttcagcgag
361aggagctcat gaagatgaag gtgaaggact tgagggacta tctcagcctc catgacatct
421ctaccgaaat gtgccgggag aaaggagagc tggtgctctt ggtccttggc cagcagcctg
481taatctccca ggaggacagg actcgtgcct ccaccttgtc cccagacttt cctgagcagc
541aggccttcct gacccagcct cactccagca tggttccacc tacctcaccc aacctcccct
601cttcatcTGC ACAAGCCACC TCTGTTCCCC CAGCCCAGGT TCAGGAGAAT CAGCAGTCTA
661TTGACTCAGA GGACAGCTTT GTCCCAGGCC GAAGGGCCTC TCTGTCTGAC CTGACTGACC
721TGGAGGACAT TGAAGGCCTG ACAGTGCGGC AGCTGAAAGA GATCTTGGCT CGCAACTTTG
781TCAACTACAA GGGCTGCTGT GAGAAGTGGG AGCTGATGGA GAGAGTGACC CGGCTATACA
841AGGATCAGAA AGGACTCCAG CACCTGGGGG GAGCAGTACC ATCAGGCTTG GAGGAGAACC
901TGTGTAAGAT CTGCATGGAC TCACCCATTG ACTGTGTTCT TCTGGAGTGT GGCCACATGG
961TAACCTGTAC CAAGTGTGGC AAGCGCATGA ATGAATGTCC CATCTGCCGG CAGTATGTAA
1021TCCGAGCTGT GCATGTCTTC CGGTCCTGCC CAACTTTCTT GTACAAAGTG GTTGATATCG
1081GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
1141AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GATCACCCCC
1201CAAACTAAGC GAGGATACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
1261aagatt

Download FASTA (ORF) (Full)