Construct: ORF TRCN0000472940

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018344.1_s317c1
Derived from:
ccsbBroadEn_05547
DNA Barcode:
TCTGCCAGAAGTTCTTTTGAGCCA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
STIMATE (375346)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472940
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 375346 STIMATE STIM activating enhancer NM_198563.3 100% 100%
2 human 100526772 STIMATE-MUSTN1 STIMATE-MUSTN1 readthrough NM_001198974.3 78.8% 78.7% 881_1116delinsTA
3 mouse 69179 Tmem110 transmembrane protein 110 NM_028839.4 89.9% 95.5% (many diffs)
4 mouse 69179 Tmem110 transmembrane protein 110 XM_011245171.1 72.6% 75.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
948
ORF length:
882
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgca gggccccgcc gggaacgcga gccggggact gccaggcggg ccgccctcca
121cagtcgcgtc cggggcgggc cgctgcgaga gcggcgcgct catgcacagc ttcggcatct
181tcctgcaggg gctgctcggc gtcgtggcct tcagcacgtt aatgctcaaa cgcttcagag
241aaccaaagca tgaaagacgt ccgtggagga tatggttttt agacacttcc aaacaagcca
301taggaatgct gttcatccac tttgcaaatg tatacctagc agatctcact gaagaggacc
361cttgttcact gtacctcatc aacttcctcc tggacgccac tgtgggcatg ctgctcatct
421acgtgggggt gcgcgccgtc agcgtcctgg tagagtggca gcagtgggag tccctgcgct
481tcggcgaata tggagaccct ctgcagtgtg gagccTGGGT CGGGCAGTGC GCTCTTTACA
541TCGTGATCAT GATTTTTGAA AAGTCTGTCG TCTTCATCGT CCTCCTAATA CTTCAGTGGA
601AAAAGGTGGC CCTGTTGAAT CCCATTGAAA ACCCAGACTT GAAGCTGGCC ATCGTCATGC
661TGATCGTCCC CTTCTTTGTC AACGCTTTGA TGTTTTGGGT AGTGGACAAT TTCCTCATGA
721GAAAGGGGAA GACGAAAGCT AAGCTAGAAG AAAGGGGAGC CAACCAGGAC TCGAGGAATG
781GGAGCAAGGT CCGCTACCGG AGGGCCGCAT CCCACGAGGA GTCTGAGTCT GAGATCCTGA
841TCTCAGCGGA TGATGAGATG GAGGAGTCCG ACGTGGAGGA GGACCTCCGC AGACTGACCC
901CCCTCAAGCC TGTGAAGAAA AAGAAGCACC GCTTTGGGCT ACCCGTATGC CCAACTTTCT
961TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
1021CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
1081GTGGAAAGGA CGATCTGCCA GAAGTTCTTT TGAGCCAACG CGTTAAGTCg acaatcaacc
1141tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)