Construct: ORF TRCN0000472974

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018489.1_s317c1
Derived from:
ccsbBroadEn_14094
DNA Barcode:
GCGAACAGCTTTCGCACATATTAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TNFAIP8 (25816)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472974
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 25816 TNFAIP8 TNF alpha induced protein 8 NM_001286813.2 100% 100%
2 human 25816 TNFAIP8 TNF alpha induced protein 8 NM_014350.4 100% 100%
3 human 25816 TNFAIP8 TNF alpha induced protein 8 XM_017009327.1 96% 94.5% (many diffs)
4 human 25816 TNFAIP8 TNF alpha induced protein 8 NM_001077654.3 94.7% 94.4% 1_1delAins31
5 human 25816 TNFAIP8 TNF alpha induced protein 8 NM_001286814.1 92.1% 90.5% (many diffs)
6 human 25816 TNFAIP8 TNF alpha induced protein 8 NM_001286815.2 83.8% 83.8% 0_1ins96
7 human 25816 TNFAIP8 TNF alpha induced protein 8 NM_001286817.2 83.8% 83.8% 0_1ins96
8 human 25816 TNFAIP8 TNF alpha induced protein 8 XM_017009328.1 83.8% 83.8% 0_1ins96
9 mouse 106869 Tnfaip8 tumor necrosis factor, alph... XM_006525479.2 83.3% 89.8% (many diffs)
10 mouse 106869 Tnfaip8 tumor necrosis factor, alph... XM_006525480.1 82.8% 89.8% (many diffs)
11 mouse 106869 Tnfaip8 tumor necrosis factor, alph... NM_001177759.1 81.6% 89.3% (many diffs)
12 mouse 106869 Tnfaip8 tumor necrosis factor, alph... NM_134131.2 80.1% 87.2% (many diffs)
13 mouse 106869 Tnfaip8 tumor necrosis factor, alph... XM_011246795.2 80.1% 87.2% (many diffs)
14 mouse 106869 Tnfaip8 tumor necrosis factor, alph... XM_011246796.2 80.1% 87.2% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
660
ORF length:
594
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgca ctccgaagca gaagaatcca aggaagtggc cacagatgtc tttaattcca
121aaaaccTGGC CGTTCAGGCA CAAAAGAAGA TCTTGGGTAA AATGGTGTCC AAATCCATCG
181CCACCACCTT AATAGACGAC ACAAGTAGTG AGGTGCTGGA TGAGCTCTAC AGAGTGACCA
241GGGAGTACAC CCAAAACAAG AAGGAGGCAG AGAAGATCAT CAAGAACCTC ATCAAGACAG
301TCATCAAGCT GGCCATTCTT TATAGGAATA ATCAGTTTAA TCAAGATGAG CTAGCATTGA
361TGGAGAAATT TAAGAAGAAA GTTCATCAGC TTGCTATGAC CGTGGTCAGT TTCCATCAGG
421TGGATTATAC CTTTGACCGG AATGTGTTAT CCAGGCTGTT AAATGAATGC AGAGAGATGC
481TGCACCAAAT CATTCAGCGC CACCTCACTG CCAAGTCACA TGGACGGGTT AATAATGTGT
541TTGATCATTT TTCAGATTGT GAATTTTTGG CTGCCTTGTA TAATCCTTTT GGGAATTTTA
601AACCCCACTT ACAAAAACTA TGTGATGGTA TCAACAAAAT GTTGGATGAA GAGAACATAT
661GCCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
721GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
781TTTATATATC TTGTGGAAAG GACGAGCGAA CAGCTTTCGC ACATATTACA CGCGTTAAGT
841Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)