Transcript: Human XM_017009328.1

PREDICTED: Homo sapiens TNF alpha induced protein 8 (TNFAIP8), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TNFAIP8 (25816)
Length:
2038
CDS:
320..820

Additional Resources:

NCBI RefSeq record:
XM_017009328.1
NBCI Gene record:
TNFAIP8 (25816)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017009328.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000271629 AGTCACATGGACGGGTTAATA pLKO_005 672 CDS 100% 15.000 21.000 N TNFAIP8 n/a
2 TRCN0000116158 CCACCTTAATAGACGACACAA pLKO.1 342 CDS 100% 4.950 6.930 N TNFAIP8 n/a
3 TRCN0000116160 GTTTCCATCAGGTGGATTATA pLKO.1 567 CDS 100% 15.000 10.500 N TNFAIP8 n/a
4 TRCN0000271582 ATGAATAATGTCCAGTATAAG pLKO_005 1420 3UTR 100% 13.200 9.240 N TNFAIP8 n/a
5 TRCN0000271627 CATCAAGCTGGCCATTCTTTA pLKO_005 460 CDS 100% 13.200 9.240 N TNFAIP8 n/a
6 TRCN0000271630 AGATGCTGCACCAAATCATTC pLKO_005 633 CDS 100% 10.800 7.560 N TNFAIP8 n/a
7 TRCN0000116161 CAGTTTAATCAAGATGAGCTA pLKO.1 491 CDS 100% 2.640 1.848 N TNFAIP8 n/a
8 TRCN0000116157 CCAAGAACTTTCTCTTGCTAT pLKO.1 1235 3UTR 100% 0.495 0.347 N TNFAIP8 n/a
9 TRCN0000116159 TGTTGGATGAAGAGAACATAT pLKO.1 798 CDS 100% 13.200 7.920 N TNFAIP8 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017009328.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000472974 GCGAACAGCTTTCGCACATATTAC pLX_317 88.5% 83.8% 83.8% V5 0_1ins96 n/a
2 ccsbBroadEn_14094 pDONR223 100% 83.3% 81.3% None 0_1ins96;483_484delGGinsA;491A>G n/a
3 ccsbBroad304_14094 pLX_304 0% 83.3% 81.3% V5 (not translated due to frame shift) 0_1ins96;483_484delGGinsA;491A>G n/a
4 ccsbBroadEn_07947 pDONR223 100% 83.3% 83.3% None (many diffs) n/a
5 ccsbBroad304_07947 pLX_304 0% 83.3% 83.3% V5 (many diffs) n/a
6 TRCN0000468140 CCTAGATTGTGCATGTAGGAACAA pLX_317 49% 83.3% 83.3% V5 (many diffs) n/a
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