Construct: ORF TRCN0000473000

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009786.1_s317c1
Derived from:
ccsbBroadEn_04457
DNA Barcode:
ATTATAAGGAATGTCTACAAAAGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TOX2 (84969)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000473000
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84969 TOX2 TOX high mobility group box... NM_001098796.2 100% 100%
2 human 84969 TOX2 TOX high mobility group box... NM_032883.3 100% 100%
3 human 84969 TOX2 TOX high mobility group box... NM_001098797.2 91.6% 91.6% 1_126del
4 human 84969 TOX2 TOX high mobility group box... XM_006723884.1 90% 90% 1_153del
5 human 84969 TOX2 TOX high mobility group box... NM_001098798.2 84.8% 84.8% 1_153del;904_905ins81
6 human 84969 TOX2 TOX high mobility group box... XM_017028109.1 65.7% 65.7% 750_751ins477
7 human 84969 TOX2 TOX high mobility group box... XR_001754425.1 50.8% 1_27del;1060_1061ins197;1223_2155del
8 mouse 269389 Tox2 TOX high mobility group box... XM_017318743.1 89% 93.1% (many diffs)
9 mouse 269389 Tox2 TOX high mobility group box... XM_006499614.3 86% 89% (many diffs)
10 mouse 269389 Tox2 TOX high mobility group box... XM_006499615.3 86% 89% (many diffs)
11 mouse 269389 Tox2 TOX high mobility group box... XM_006499612.3 81.6% 85.3% (many diffs)
12 mouse 269389 Tox2 TOX high mobility group box... XM_006499613.3 80.9% 83.7% (many diffs)
13 mouse 269389 Tox2 TOX high mobility group box... XM_006499608.3 80.5% 84.2% (many diffs)
14 mouse 269389 Tox2 TOX high mobility group box... XM_006499611.3 79% 81.8% (many diffs)
15 mouse 269389 Tox2 TOX high mobility group box... XM_006499610.3 78.4% 81.1% (many diffs)
16 mouse 269389 Tox2 TOX high mobility group box... NM_001098799.1 78% 80.7% (many diffs)
17 mouse 269389 Tox2 TOX high mobility group box... XM_006499609.3 75.2% 77.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1458
ORF length:
1392
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag tgacggaaac ccagagctcc tgtcaaccag ccagacctac aacggccaga
121gcgagaacaa cgaagactat gagatccccc cgataacacc tcccaacctc ccggagccat
181ccctcctgca cctgggggac cacgaagcca gctaccactc gctgtgccac ggcctcaccc
241ccaacggtct gctccctgcc tactcctatc aggccatgga cctcccagcc atcatggtgt
301ccaacatgct agcacaggac agccacctgc tgtcgggcca gctgcccacg atccaggaga
361tggtccactc ggaagtggct gcctatgact cgggccggcc cgggcccctg ctgggtcgcc
421cggcaatgct ggccagccac atgagtgccc tcagccagtc ccagctcatc tcgcagatgg
481gcatccggag cagcatcgcc cacagctccc catcaccgcc ggggagcaag tcagcgaccc
541cctctccctc cagctccact caggaagagg agtcggaagt gcatttcaag atctcgggag
601aaaagagacc ttcagccgac ccaggaaaaa aggccaagaa cccgaagaag aagaaaaaga
661aggaccccaa tgagccgcag aagcctgtgt cggcctacgc actcttcttc agagacactc
721aggccgccat caagggtcag aaccccagtg ccactttcgg tgacgtgtcc aaaatcgtgg
781cctccatgtg ggacagcctg ggagaggaac agaagcaggc ctacaagagg aagacagaag
841cagcaaagaa ggaatatctg aaggccctgg cagcctaccg ggctagcctc gtctccaaga
901gctccccaga tcaaggtgag accaagagca ctcaggcaaa cccaccagcc aaaatgctcc
961cacccaagca gcccatgtat gccatgccag gcctggcctc cttcctgacg ccgtcggacc
1021tgcaggcctt ccgcagtggg gcctcccctg ccagcctcgc ccggacgctg ggctccaagt
1081ctctgctgcc aggcctcagt gcgtccccgc cgccgccacc cTCCTTCCCG CTCAGCCCCA
1141CACTGCACCA GCAGCTGTCA CTGCCCCCTC ACGCCCAGGG CGCCCTCCTC AGTCCACCTG
1201TTAGCATGTC CCCAGCCCCC CAGCCCCCTG TCCTGCCCAC CCCCATGGCA CTCCAGGTGC
1261AGCTGGCGAT GAGCCCCTCA CCTCCAGGGC CACAGGACTT CCCGCACATC TCTGAGTTCC
1321CCAGCAGCTC GGGATCCTGC TCACCTGGCC CATCCAACCC CACCAGCAGC GGGGACTGGG
1381ACAGCAGCTA CCCCAGTGGG GAGTGTGGCA TCAGCACCTG CAGCCTGCTC CCCAGGGACA
1441AATCGCTCTA CCTCACCTAC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
1501TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
1561GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAATTATAA GGAATGTCTA
1621CAAAAGGACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)

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