Construct: ORF TRCN0000473030

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003477.1_s317c1
Derived from:
ccsbBroadEn_06387
DNA Barcode:
TTGCTACGTAGGGTTTTTCAAGGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HNRNPC (3183)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000473030
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3183 HNRNPC heterogeneous nuclear ribon... NM_001077442.1 99.8% 99.6% 329A>G
2 human 3183 HNRNPC heterogeneous nuclear ribon... NM_031314.2 99.8% 99.6% 329A>G
3 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536708.1 99.8% 99.6% 329A>G
4 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536709.3 99.8% 99.6% 329A>G
5 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536710.2 99.8% 99.6% 329A>G
6 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536711.2 99.8% 99.6% 329A>G
7 human 3183 HNRNPC heterogeneous nuclear ribon... XM_024449556.1 99.8% 99.6% 329A>G
8 human 3183 HNRNPC heterogeneous nuclear ribon... XM_024449557.1 99.8% 99.6% 329A>G
9 human 3183 HNRNPC heterogeneous nuclear ribon... NM_001077443.1 95.7% 95.7% 316_317ins39
10 human 3183 HNRNPC heterogeneous nuclear ribon... NM_004500.3 95.7% 95.7% 316_317ins39
11 human 3183 HNRNPC heterogeneous nuclear ribon... XM_006720125.3 95.7% 95.7% 316_317ins39
12 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536712.2 95.7% 95.7% 316_317ins39
13 human 3183 HNRNPC heterogeneous nuclear ribon... XM_017021252.2 95.7% 95.7% 316_317ins39
14 human 3183 HNRNPC heterogeneous nuclear ribon... XM_017021253.2 95.7% 95.7% 316_317ins39
15 human 3183 HNRNPC heterogeneous nuclear ribon... XM_024449558.1 95.7% 95.7% 316_317ins39
16 human 3183 HNRNPC heterogeneous nuclear ribon... XM_024449559.1 95.7% 95.7% 316_317ins39
17 human 343069 HNRNPCL1 heterogeneous nuclear ribon... NM_001013631.2 90.6% 86.9% (many diffs)
18 human 440563 HNRNPCL2 heterogeneous nuclear ribon... NM_001136561.3 89.5% 84.6% (many diffs)
19 human 649330 HNRNPCL3 heterogeneous nuclear ribon... NM_001146181.2 89.2% 84.6% (many diffs)
20 human 101060301 HNRNPCL4 heterogeneous nuclear ribon... NM_001302551.1 89.1% 84.6% (many diffs)
21 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518574.2 92.8% 97% (many diffs)
22 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315850.1 92.8% 97% (many diffs)
23 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315851.1 92.8% 97% (many diffs)
24 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_011244965.2 92.5% 96.7% (many diffs)
25 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315852.1 92.5% 96.7% (many diffs)
26 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315853.1 92.5% 96.7% (many diffs)
27 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315854.1 92.5% 96.7% (many diffs)
28 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_016884.3 90.7% 94.9% (many diffs)
29 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518571.3 90.7% 94.9% (many diffs)
30 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518572.3 90.7% 94.9% (many diffs)
31 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315849.1 90.7% 94.9% (many diffs)
32 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_001170983.1 88.8% 93.4% (many diffs)
33 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518578.2 88.8% 93.4% (many diffs)
34 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315857.1 88.8% 93.4% (many diffs)
35 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315858.1 88.8% 93.4% (many diffs)
36 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_001170984.1 88.4% 93.1% (many diffs)
37 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518581.2 88.4% 93.1% (many diffs)
38 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315859.1 88.4% 93.1% (many diffs)
39 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_001170981.1 86.8% 91.4% (many diffs)
40 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_001170982.1 86.8% 91.4% (many diffs)
41 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315855.1 86.8% 91.4% (many diffs)
42 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315856.1 86.8% 91.4% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
984
ORF length:
918
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc cagcaacgtt accaacaaga cagatcctcg ctccatgaac tcccgtgtat
121tcattgggaa tctcaacact cttgtggtca agaaatctga tgtggaggca atcttttcga
181agtatggcaa aattgtgggc tgctctgttc ataagggctt tgccttcgtt cagtatgtta
241atgagagaaa tgcccgggct gctgtagcag gagaggatgg cagaatgatt gctggccagg
301ttttagatat taacctggct gcagagccaa aagtgaaccg aggaaaagca ggtgtgaaac
361gatctgcagc ggagatgtac gggtcagtaa caggacaccc ttctccgtcc cctctactca
421gctcctcttt tgacttggac tatgactttc aacgggacta ttatgatagg atgtacagtt
481acccagcacg tgtacctcct cctccTCCTA TTGCTCGGGC TGTAGTGCCC TCGAAACGTC
541AGCGTGTATC AGGAAACACT TCACGAAGGG GCAAAAGTGG CTTCAATTCT AAGAGTGGAC
601AGCGGGGATC TTCCAAGTCT GGAAAGTTGA AAGGAGATGA CCTTCAGGCC ATTAAGAAGG
661AGCTGACCCA GATAAAACAA AAAGTGGATT CTCTCCTGGA AAACCTGGAA AAAATTGAAA
721AGGAACAGAG CAAACAAGCA GTAGAGATGA AGAATGATAA GTCAGAAGAG GAGCAGAGCA
781GCAGCTCCGT GAAGAAAGAT GAGACTAATG TGAAGATGGA GTCTGAGGGG GGTGCAGATG
841ACTCTGCTGA GGAGGGGGAC CTACTGGATG ATGATGATAA TGAAGATCGG GGGGATGACC
901AGCTGGAGTT GATCAAGGAT GATGAAAAAG AGGCTGAGGA AGGAGAGGAT GACAGAGACA
961GCGCCAATGG CGAGGATGAC TCTTACCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA
1021AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
1081TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAT TGCTACGTAG
1141GGTTTTTCAA GGCACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
1201att

Download FASTA (ORF) (Full)