Construct: ORF TRCN0000473032
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005321.1_s317c1
- Derived from:
- ccsbBroadEn_10280
- DNA Barcode:
- GAAGCCGCTCACGTGTGTTCACCT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KIR3DX1 (90011)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473032
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 90011 | KIR3DX1 | killer cell immunoglobulin ... | NR_104096.1 | 7.3% | 1_898del;1133_3175del | |
| 2 | human | 90011 | KIR3DX1 | killer cell immunoglobulin ... | NR_104095.1 | 7.3% | 1_916del;1151_3193del | |
| 3 | human | 90011 | KIR3DX1 | killer cell immunoglobulin ... | NR_104097.1 | 7.1% | 1_1009del;1244_3286del | |
| 4 | human | 90011 | KIR3DX1 | killer cell immunoglobulin ... | NR_026716.2 | 6.6% | 1_1236del;1471_3513del | |
| 5 | human | 90011 | KIR3DX1 | killer cell immunoglobulin ... | NR_136268.1 | 6.5% | 1_1236del;1471_3586del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 155
- ORF end:
- 389
- ORF length:
- 234
- Sequence:
-
1 CACTTGATGT AATTCTCCTT GGAATTTGCC CTTTTTGAGT TTGGATCTTG GTTCATTCTC 61 AAGCCTCAGA CAGTGGTTCA AAGTTTTTTT CTTCCATTTC AGGTGTCGTG AGGCTAGCAT 121 CGATTGATCA ACAAGTTTGT ACAAAAAAGT TGGCATGGCA AACACAGAGC CCACGGAAGG 181 CCAACGGACG GATGAAGAGG AGCCTGCAGC AGAAGAGACA CAGGAGATCA TATATGCCCA 241 GTTAAACCAC CAGGCCCTCT CACAGACAGG ATTCCCTCCT GCCTCCCAGT GTCCCCACTA 301 CCTCTCGGAG GATCCTAGTA TCTACATCAC TGTCCACCAA GCCCAGGCTG AGGCCAGAGC 361 TGCCCCCAGT CTTTGGCACA AAGGGCATTA CCCAACTTTC TTGTACAAAG TGGTTGATAT 421 CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC 481 GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAGAAGCC 541 GCTCACGTGT GTTCACCTAC GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt 601 gaaagatt