Construct: ORF TRCN0000473060

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000165.2_s317c1
Derived from:
ccsbBroadEn_15003
DNA Barcode:
TCACTATTTTAATAAGACACTAGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
STK38L (23012)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000473060
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23012 STK38L serine/threonine kinase 38 ... NM_015000.4 99.9% 100% 993G>A
2 human 23012 STK38L serine/threonine kinase 38 ... XM_006719058.4 99.9% 100% 993G>A
3 human 23012 STK38L serine/threonine kinase 38 ... XM_024448894.1 99.9% 100% 993G>A
4 human 23012 STK38L serine/threonine kinase 38 ... XM_024448895.1 99.9% 100% 993G>A
5 human 23012 STK38L serine/threonine kinase 38 ... XM_024448896.1 99.9% 100% 993G>A
6 human 23012 STK38L serine/threonine kinase 38 ... XM_024448897.1 99.9% 100% 993G>A
7 human 23012 STK38L serine/threonine kinase 38 ... XM_005253342.4 91% 91.1% 182_183ins123;870G>A
8 human 23012 STK38L serine/threonine kinase 38 ... XM_024448889.1 88.9% 88.8% 776_946del;1164G>A
9 human 23012 STK38L serine/threonine kinase 38 ... XM_024448890.1 88.9% 88.8% 776_946del;1164G>A
10 human 23012 STK38L serine/threonine kinase 38 ... XM_024448891.1 88.9% 88.8% 776_946del;1164G>A
11 human 23012 STK38L serine/threonine kinase 38 ... XM_024448892.1 88.9% 88.8% 776_946del;1164G>A
12 human 23012 STK38L serine/threonine kinase 38 ... XM_024448893.1 88.9% 88.8% 776_946del;1164G>A
13 human 23012 STK38L serine/threonine kinase 38 ... XM_006719059.3 88.7% 88.7% 0_1ins156;837G>A
14 human 23012 STK38L serine/threonine kinase 38 ... XM_011520613.2 79.8% 79.9% 0_1ins156;26_27ins123;714G>A
15 human 23012 STK38L serine/threonine kinase 38 ... XR_001748626.1 27.1% (many diffs)
16 mouse 232533 Stk38l serine/threonine kinase 38 ... NM_172734.3 89.8% 97.6% (many diffs)
17 mouse 232533 Stk38l serine/threonine kinase 38 ... XM_006507027.2 88.4% 96.1% (many diffs)
18 mouse 232533 Stk38l serine/threonine kinase 38 ... XM_006507029.3 87.3% 94.9% (many diffs)
19 mouse 232533 Stk38l serine/threonine kinase 38 ... XM_006507031.2 78% 85.3% (many diffs)
20 mouse 232533 Stk38l serine/threonine kinase 38 ... NM_001346666.1 66.6% 72.6% (many diffs)
21 mouse 232533 Stk38l serine/threonine kinase 38 ... XM_017321560.1 66.6% 72.6% (many diffs)
22 mouse 232533 Stk38l serine/threonine kinase 38 ... XM_006507032.2 65.6% 71.5% (many diffs)
23 mouse 232533 Stk38l serine/threonine kinase 38 ... XM_006507033.2 65.6% 71.5% (many diffs)
24 mouse 232533 Stk38l serine/threonine kinase 38 ... XR_001785124.1 18.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1458
ORF length:
1392
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc aatgacggca gggactacaa caacctttcc tatgagcaac catacccggg
121aaagagtgac tgtagccaag ctcacattgg agaattttta tagcaaccta attttacagc
181atgaagagag agaaaccagg cagaagaaat tagaagtggc catggaagaa gaaggattag
241cagatgaaga gaaaaagtta cgtcgatcac aacacgctcg caaagaaaca gagttcttac
301ggctcaaaag gaccagactt ggcttggatg actttgagtc tctgaaagtt ataggaagag
361gagcttttgg agaggtgcgg ttggtccaga agaaagatac aggccatatc tatgcaatga
421agatattgag aaagtctgat atgcttgaaa aagagcaggt ggcccatatc cgagcagaaa
481gagatatttt ggtagaagca gatggtgcct gggtggtgaa gatgttttac agttttcagg
541ataagaggaa tctttatcta atcatggaat ttctccctgg aggtgacatg atgacattgc
601taatgaagaa agacaccttg acagaagagg aaacacagtt ctacatttca gagactgttc
661tggcaataga tgcgatccac cagttgggtt tcatccatcg ggatattaag ccagacaacc
721ttttattgga tgccaagggt catgtaaaat tatctgattt tggtttatgt acgggattaa
781agaaagctca caggactgaa ttttatagaa atctcacaca caacccacca agtgacttct
841catttcagaa catgaactca aagaggaaag cagaaacttg gaagaagaac aggagacaac
901tggcatattc cacagttggg acaccagatt acattgctcc agaagtattc atgcagactg
961gttacaacaa attgtgtgac tggtggtctt tgggagtgat tatgtatgaa atgctaatag
1021gatatccacc tttctgctct gaaacaccTC AAGAAACATA CAGAAAAGTG ATGAACTGGA
1081AAGAAACTCT GGTATTTCCT CCAGAGGTAC CTATATCTGA GAAAGCCAAG GACTTAATTC
1141TCAGATTTTG TATTGATTCT GAAAACAGAA TTGGAAATAG TGGAGTAGAA GAAATAAAAG
1201GTCATCCCTT TTTTGAAGGT GTCGACTGGG AGCACATAAG GGAAAGGCCA GCAGCAATCC
1261CTATAGAAAT CAAAAGCATT GATGATACTT CAAATTTTGA TGACTTCCCT GAATCTGATA
1321TTTTACAACC AGTGCCAAAT ACCACAGAAC CGGACTACAA ATCCAAAGAC TGGGTTTTTC
1381TCAATTATAC CTATAAAAGG TTTGAAGGGT TGACTCAACG TGGCTCTATC CCCACCTACA
1441TGAAAGCTGG GAAGTTATGC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
1501TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
1561GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGATCACTAT TTTAATAAGA
1621CACTAGCACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)