Construct: ORF TRCN0000473084

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014712.1_s317c1
Derived from:
ccsbBroadEn_02337
DNA Barcode:
ACTTCGGTATTTTCCGCTAAGGTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC25A13 (10165)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000473084
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10165 SLC25A13 solute carrier family 25 me... NM_014251.3 100% 100%
2 human 10165 SLC25A13 solute carrier family 25 me... NM_001160210.1 99.8% 99.8% 930_932delGCA
3 human 10165 SLC25A13 solute carrier family 25 me... XM_006715831.4 98% 97.6% (many diffs)
4 human 10165 SLC25A13 solute carrier family 25 me... XM_017011663.1 97.1% 96.6% (many diffs)
5 human 10165 SLC25A13 solute carrier family 25 me... XM_011515727.3 64.3% 62.9% (many diffs)
6 human 10165 SLC25A13 solute carrier family 25 me... XR_001744525.2 62.4% 1_171del;1483_1557del;2272_3245del
7 human 10165 SLC25A13 solute carrier family 25 me... NR_027662.2 60.7% 1_142del;353_354ins116;2052_3025del
8 human 10165 SLC25A13 solute carrier family 25 me... XM_017011664.2 57.9% 57.9% 0_1ins852
9 human 10165 SLC25A13 solute carrier family 25 me... XM_017011665.1 57.9% 57.9% 0_1ins852
10 human 10165 SLC25A13 solute carrier family 25 me... XR_002956405.1 53% (many diffs)
11 mouse 50799 Slc25a13 solute carrier family 25 (m... NM_001177572.1 88.8% 95.5% (many diffs)
12 mouse 50799 Slc25a13 solute carrier family 25 (m... NM_015829.3 88.7% 95.4% (many diffs)
13 mouse 50799 Slc25a13 solute carrier family 25 (m... XM_006505136.3 67.3% 70.1% (many diffs)
14 mouse 50799 Slc25a13 solute carrier family 25 (m... XM_006505137.3 58.6% 61.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2091
ORF length:
2025
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ggccgccaag gtggctttaa ccaagagagc agatccagct gagcttagaa
121caatattttt gaagtatgca agcattgaga aaaacggtga atttttcatg tcccccaatg
181actttgtcac tcgatacttg aacatttttg gagaaagcca gcctaatcca aagactgtgg
241aacttttaag tggagtggtg gatcagacca aagatggatt aatatctttt caagaatttg
301ttgcctttga atctgtcctg tgtgcccctg atgctttgtt tatggtagcc tttcagctgt
361ttgacaaagc tggcaaagga gaagtaactt ttgaggatgt taagcaagtt tttggacaga
421ccacaattca tcaacatatt ccatttaact gggattcaga atttgtgcaa ctacattttg
481gaaaagaaag aaaaagacac ctgacatatg cggaatttac tcagttttta ttggaaatac
541aactggagca cgcaaagcaa gcctttgtgc aacgggacaa tgctaggact gggagagtca
601cagccatcga cttccgagac atcatggtca ccatccgccc ccatgtcttg actccttttg
661tagaagaatg tctagtagct gctgctggag gtaccacatc ccatcaagtt agtttctcct
721attttaatgg atttaattcg ctccttaaca acatggaact cattagaaag atctatagca
781ctctggctgg caccaggaaa gatgttgaag tgactaagga ggagtttgtt ctggcagctc
841agaaatttgg tcaggttaca cccatggaag ttgacatctt gtttcagtta gcagatttat
901atgagccaag gggacgtatg accttagcag acattgaacg gattgctcct ctggaagagg
961gaactctgcc ctttaacttg gctgaggccc agaggcagaa ggcctcaggt gattcagctc
1021gaccagttct tctacaagtt gcagagtcgg cctacaggtt tggtctgggt tctgttgctg
1081gagctgttgg agccactgct gtgtatccta tcgatcttgt aaaaactcga atgcagaacc
1141aacgatcaac tggctctttt gtgggagaac tcatgtataa aaacagcttt gactgtttta
1201agaaagtgct acgctatgaa ggcttctttg gactgtatag aggtctgttg ccacagttat
1261tgggagttgc cccagagaag gccataaaac ttacagtgaa cgattttgtg agggataaat
1321ttatgcacaa agatggttcg gtcccacttg cagcagaaat tcttgctgga ggctgcgctg
1381gaggctccca ggtgattttc acaaatcctt tagaaatcgt caagatccgt ttgcaagtgg
1441caggagaaat caccactggt cctcgagtca gtgctctgtc tgtcgtgcgg gacctggggt
1501tttttgggat ctacaagggt gccaaagcat gctttctgcg ggacattcct ttctcggcca
1561tctactttcc gtgctatgct catgtgaagg cttcctttgc aaatgaagat gggcaggtta
1621gcccaggaag cctgctctta gctggtgcca tagctggtat gcctgcagca tctttagtga
1681cccctgctga tgttatcaag acgagattac aggtggctgc ccgggctggc caaaCCACTT
1741ACAGCGGAGT GATAGACTGC TTTAGAAAGA TACTGCGTGA AGAAGGACCA AAAGCTCTGT
1801GGAAGGGAGC TGGTGCTCGT GTATTTCGAT CCTCACCCCA GTTTGGTGTA ACTTTGCTGA
1861CTTACGAATT GCTACAGCGA TGGTTCTACA TTGATTTTGG AGGAGTAAAA CCCATGGGAT
1921CAGAGCCAGT TCCTAAATCC AGGATCAACC TGCCTGCCCC GAATCCTGAT CACGTTGGGG
1981GCTACAAACT GGCAGTTGCT ACATTTGCAG GGATTGAAAA CAAATTTGGA CTTTACCTAC
2041CTCTCTTCAA GCCATCAGTA TCTACCTCAA AGGCTATTGG TGGAGGCCCA TACCCAACTT
2101TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
2161CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
2221CTTGTGGAAA GGACGAACTT CGGTATTTTC CGCTAAGGTC ACGCGTTAAG TCgacaatca
2281acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)