Transcript: Mouse NM_001177572.1

Mus musculus solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13 (Slc25a13), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Slc25a13 (50799)
Length:
3130
CDS:
164..2191

Additional Resources:

NCBI RefSeq record:
NM_001177572.1
NBCI Gene record:
Slc25a13 (50799)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001177572.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000069205 GCGGTGGTTCTATGTCGATTT pLKO.1 1975 CDS 100% 10.800 15.120 N Slc25a13 n/a
2 TRCN0000069206 GCTGAGCTTAAAGCAATATTT pLKO.1 206 CDS 100% 15.000 12.000 N Slc25a13 n/a
3 TRCN0000303089 GCTGAGCTTAAAGCAATATTT pLKO_005 206 CDS 100% 15.000 12.000 N Slc25a13 n/a
4 TRCN0000069204 CGCATGACCTTAGCAGACATT pLKO.1 1013 CDS 100% 4.950 3.960 N Slc25a13 n/a
5 TRCN0000303088 CGCATGACCTTAGCAGACATT pLKO_005 1013 CDS 100% 4.950 3.960 N Slc25a13 n/a
6 TRCN0000069203 CGGTTCCTAAATCCCGGATTA pLKO.1 2025 CDS 100% 10.800 7.560 N Slc25a13 n/a
7 TRCN0000315541 CGGTTCCTAAATCCCGGATTA pLKO_005 2025 CDS 100% 10.800 7.560 N Slc25a13 n/a
8 TRCN0000069207 CCTTAACAACATGGAACTCAT pLKO.1 841 CDS 100% 4.950 3.465 N Slc25a13 n/a
9 TRCN0000303087 CCTTAACAACATGGAACTCAT pLKO_005 841 CDS 100% 4.950 3.465 N Slc25a13 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001177572.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02337 pDONR223 100% 88.8% 95.5% None (many diffs) n/a
2 ccsbBroad304_02337 pLX_304 0% 88.8% 95.5% V5 (many diffs) n/a
3 TRCN0000473084 ACTTCGGTATTTTCCGCTAAGGTC pLX_317 17.9% 88.8% 95.5% V5 (many diffs) n/a
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