Construct: ORF TRCN0000473266

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000359.1_s317c1
Derived from:
ccsbBroadEn_07835
DNA Barcode:
GCCTACTCAAGCGCAAGCGAATGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF423 (23090)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000473266
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23090 ZNF423 zinc finger protein 423 NM_015069.4 99.9% 100% 543T>C;1902C>T;2673T>C
2 human 23090 ZNF423 zinc finger protein 423 XM_017023076.2 99.1% 98.9% (many diffs)
3 human 23090 ZNF423 zinc finger protein 423 XM_006721171.4 98.7% 98.4% (many diffs)
4 human 23090 ZNF423 zinc finger protein 423 NM_001271620.2 95.2% 95.3% (many diffs)
5 human 23090 ZNF423 zinc finger protein 423 XM_005255856.4 95.2% 95.3% (many diffs)
6 human 23090 ZNF423 zinc finger protein 423 XM_017023077.1 95.2% 95.3% (many diffs)
7 human 23090 ZNF423 zinc finger protein 423 XM_017023078.1 95.2% 95.3% (many diffs)
8 human 23090 ZNF423 zinc finger protein 423 NM_001330533.2 90.8% 90.8% (many diffs)
9 mouse 94187 Zfp423 zinc finger protein 423 NM_033327.2 90.9% 97.2% (many diffs)
10 mouse 94187 Zfp423 zinc finger protein 423 XM_017313033.1 90.8% 97% (many diffs)
11 mouse 94187 Zfp423 zinc finger protein 423 XM_011248560.2 89.6% 95.8% (many diffs)
12 mouse 94187 Zfp423 zinc finger protein 423 NM_001310520.1 82.9% 89.4% (many diffs)
13 mouse 94187 Zfp423 zinc finger protein 423 XM_006531539.3 82.9% 89.4% (many diffs)
14 mouse 94187 Zfp423 zinc finger protein 423 XM_011248561.2 82.9% 89.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3921
ORF length:
3852
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gcataagaag agggttgaag agggggaggc ctcagacttc tcgctggcct
121gggattcctc cgtgacagca gcaggaggcc tagaaggaga gccagagtgc gatcagaaaa
181ccagccgtgc gctggaagac aggaacagcg tgacaagtca agaggagaga aatgaggatg
241atgaagacat ggaggatgaa tcaatttaca cctgcgatca ctgtcagcag gacttcgagt
301ctctggcaga cctgacggac caccgggccc accgctgtcc tggagatggt gatgacgacc
361cacaactctc ctgggtggcc tcgtctccct ccagcaagga tgttgcgtca cccacgcaga
421tgatcggaga tggttgtgac ctcggcctcg gcgaggagga agggggcacg ggcctgccat
481acccttgcca gttctgcgac aagtccttca tccgcttgag ctacttgaag aggcacgagc
541agatccacag cgacaagctg ccgttcaagt gcacctactg cagccgcctc ttcaagcaca
601agaggagccg cgaccggcac atcaagctgc atacgggcga caagaagtat cactgccacg
661agtgcgaggc agccttctcc cgcagcgacc acctcaagat ccacctgaag acccacagct
721ccagcaagcc cttcaagtgc actgtgtgca agcgcggctt ctcctccacc agctcgctgc
781agagccacat gcaggcccac aaaaagaaca aggagcatct ggccaagtcg gagaaggaag
841ccaagaagga cgacttcatg tgcgactact gcgaggacac cttcagccag acggaggagc
901tggagaagca cgtgctcacc cgccacccgc agctgtccga gaaggcggac ctgcagtgca
961ttcactgccc tgaggtcttc gtcgacgaga acacactgct cgcccatatc caccaagccc
1021acgccaacca gaaacacaag tgccccatgt gccctgagca gttctcctca gtggaaggtg
1081tctactgcca cctggacagc caccggcagc ccgactccag caaccacagt gtcagtcccg
1141accctgtact gggcagcgtg gcctccatga gcagcgccac acccgactcc agcgcctctg
1201tggagcgtgg ctccaccccg gactccacct tgaagccgct gcgggggcag aagaagatgc
1261gggatgacgg gcagggctgg accaaggtgg tctatagctg cccctattgt tccaagcggg
1321actttaacag cctggccgtg ctggagatcc acctgaagac catccacgcg gacaagcccc
1381agcagagcca cacatgtcag atctgcctgg actccatgcc caccctctac aacctcaacg
1441agcacgttcg caagctgcac aagaaccatg cctaccctgt gatgcagttt ggcaacatct
1501ctgccttcca ctgcaactac tgccccgaga tgttcgccga catcaatagc ctgcaggagc
1561acatccgcgt ctcccactgc ggccccaacg ccaacccctc tgacggtaat aatgctttct
1621tctgcaacca gtgctccatg ggtttcctta ctgagtcctc cctcaccgag cacatccagc
1681aggcccactg cagtgtgggc agtgccaaac tagagtctcc ggtggtgcag cccacgcagt
1741ccttcatgga ggtctattcc tgcccctact gcaccaactc ccccatcttt ggctccatcc
1801tgaaactcac caagcacatc aaggagaacc acaagaacat tccactggcc cacagcaaga
1861agtccaaggc cgagcagagc ccagtctcgt ccgatgtgga ggtgtcttcc ccgaagcggc
1921agcggctctc agcaagcgcc aactccatct ccaatgggga gtatccttgt aatcaatgcg
1981acctcaagtt ctccaacttt gagagcttcc agacccacct gaagctgcac ctggagctgc
2041tgctgcggaa gcaagcgtgc ccccagtgca aagaggactt tgactcccag gagtccctcc
2101tgcagcacct gacagtgcat tacatgacca cgtcgaccca ctatgtgtgc gagagctgcg
2161acaagcaatt ttcctcggtg gatgacctgc agaagcacct gctggacatg cacacctttg
2221tgttgtacca ctgcaccctg tgtcaggagg tcttcgactc caaggtgtcc atccaggtgc
2281acctggcggt gaagcacagc aatgagaaga agatgtaccg ctgcacggcc tgcaactggg
2341acttccgcaa ggaggctgac ctgcaggtgc acgtcaaaca cagccacctg ggcaacccgg
2401ccaaggctca caagtgcatc ttctgtgggg agaccttcag caccgaggtg gagctgcagt
2461gccacatcac cacacacagc aagaagtata actgtaagtt ctgcagcaag gccttccacg
2521ccatcatcct gctggagaag cacctgcggg agaagcactg tgtgtttgat gctgcgaccg
2581agaacggcac ggccaatggg gtacccccaa tggccaccaa gaaagctgag cctgctgacc
2641tgcagggcat gctgcttaag aaccctgagg cacctaacag ccatgaggcc agcgaggatg
2701acgtggacgc gtcggagccc atgtacggct gtgacatctg cggggcggcc tacaccatgg
2761aggtgctgct gcagaatcac cggctgcggg accacaatat ccggccgggc gaggatgatg
2821gctcacgcaa gaaggctgag tttatcaagg gcagtcacaa gtgcaacgtt tgttcacgga
2881ctttcttctc ggagaacggg ctacgggagc acctgcagac gcaccggggc cctgccaagc
2941actacatgtg tcccatctgt ggtgagcgct tcccttcgct gctgacgctc accgaacaca
3001aggtgaccca cagcaagagc ctggacacgg gcacctgtcg catctgcaag atgcccctgc
3061agagcgagga ggagtttatt gagcactgcc agatgcaccc tgacctgcgc aactcactca
3121cgggcttccg ctgtgtggtc tgcatgcaga cagtcacttc cacgcttgag ctcaagatcc
3181atggcacctt ccacatgcag aagctggcgg gcagctcagc ggcgtcctcc cccaatggcc
3241aggggctgca gaagctctac aagtgcgccc tgtgcctcaa ggagttccgc agcaagcagg
3301acctggtgaa gcttgacgtc aatgggctgc cctacggcct ctgcgccggc tgcatggccc
3361gcagcgccaa cggacaggtg ggtggcctgg ccccgcccga gcccgccgac cggccctgtg
3421ccggccTCCG TTGCCCCGAG TGCAGTGTCA AGTTTGAGAG TGCCGAAGAC CTGGAGAGCC
3481ACATGCAGGT GGACCACCGT GACCTCACGC CGGAGACCAG TGGGCCCCGG AAAGGCACCC
3541AGACATCGCC AGTGCCCCGG AAAAAGACAT ACCAGTGCAT CAAGTGCCAG ATGACCTTCG
3601AGAACGAGAG AGAGATCCAA ATCCACGTTG CCAACCACAT GATTGAGGAA GGCATCAACC
3661ACGAGTGTAA GCTGTGCAAC CAGATGTTCG ACTCCCCGGC CAAGCTCCTC TGTCACCTCA
3721TTGAGCACAG CTTCGAGGGC ATGGGCGGCA CCTTCAAATG CCCCGTGTGT TTCACAGTCT
3781TCGTCCAGGC CAACAAGTTG CAGCAGCACA TCTTTGCCGT GCACGGGCAG GAGGACAAGA
3841TCTACGACTG CTCACAGTGC CCTCAGAAGT TCTTCTTCCA GACCGAGCTG CAGAACCACA
3901CGATGAGCCA GCACGCACAG TTGCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
3961CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
4021AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGAGCCT ACTCAAGCGC
4081AAGCGAATGC ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)