Construct: ORF TRCN0000473389
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001616.1_s317c1
- Derived from:
- ccsbBroadEn_11151
- DNA Barcode:
- CATTGGAGCGGCCCTTCAGACTAA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SP2 (6668)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473389
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6668 | SP2 | Sp2 transcription factor | XM_024450892.1 | 99% | 99.1% | 586C>T;636T>C;1804_1818del |
| 2 | human | 6668 | SP2 | Sp2 transcription factor | NM_003110.6 | 97.9% | 98% | (many diffs) |
| 3 | human | 6668 | SP2 | Sp2 transcription factor | XM_006722025.2 | 90.9% | 91% | 586C>T;636T>C;1804_1980del |
| 4 | human | 6668 | SP2 | Sp2 transcription factor | XM_006722026.2 | 90.9% | 91% | 586C>T;636T>C;1804_1980del |
| 5 | human | 6668 | SP2 | Sp2 transcription factor | XM_006722027.2 | 90.9% | 91% | 586C>T;636T>C;1804_1980del |
| 6 | human | 6668 | SP2 | Sp2 transcription factor | XM_011525142.1 | 90.9% | 91% | 586C>T;636T>C;1804_1980del |
| 7 | human | 6668 | SP2 | Sp2 transcription factor | XM_011525143.1 | 90.9% | 91% | 586C>T;636T>C;1804_1980del |
| 8 | human | 6668 | SP2 | Sp2 transcription factor | XM_017024968.1 | 90.9% | 91% | 586C>T;636T>C;1804_1980del |
| 9 | human | 6668 | SP2 | Sp2 transcription factor | XM_006722023.2 | 90% | 90.1% | (many diffs) |
| 10 | human | 6668 | SP2 | Sp2 transcription factor | XM_011525140.2 | 83.7% | 83.8% | (many diffs) |
| 11 | human | 6668 | SP2 | Sp2 transcription factor | XM_011525139.2 | 82.5% | 82.6% | (many diffs) |
| 12 | human | 6668 | SP2 | Sp2 transcription factor | XM_011525138.2 | 78.9% | 79% | (many diffs) |
| 13 | human | 6668 | SP2 | Sp2 transcription factor | XM_011525137.2 | 78.1% | 78.2% | (many diffs) |
| 14 | human | 6668 | SP2 | Sp2 transcription factor | XM_011525136.2 | 77.8% | 77.9% | (many diffs) |
| 15 | mouse | 78912 | Sp2 | Sp2 transcription factor | XM_006534518.3 | 88% | 93% | (many diffs) |
| 16 | mouse | 78912 | Sp2 | Sp2 transcription factor | XM_006534519.3 | 88% | 93% | (many diffs) |
| 17 | mouse | 78912 | Sp2 | Sp2 transcription factor | XM_006534520.3 | 88% | 93% | (many diffs) |
| 18 | mouse | 78912 | Sp2 | Sp2 transcription factor | XM_006534521.3 | 88% | 93% | (many diffs) |
| 19 | mouse | 78912 | Sp2 | Sp2 transcription factor | NM_001080964.1 | 87.3% | 92.3% | (many diffs) |
| 20 | mouse | 78912 | Sp2 | Sp2 transcription factor | NM_030220.3 | 87.1% | 92.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1869
- ORF length:
- 1803
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc tgccactgct gctgtgagtc ccagtgacta cctgcagcct gccgcctcca 121 ccacccagga ctcccagcca tctcccttag ccctgcttgc tgcaacatgt agcaaaattg 181 gccctccagc agttgaagct gctgtgacac ctcctgctcc cccacagccc acaccgcgga 241 aacttgtccc tatcaaacct gcccctctcc ctctcagccc cggcaagaat agctttggaa 301 tcttgtcctc caaaggaaat atacttcaga ttcaggggtc acaactgagc gcctcctatc 361 ctggagggca gctggtgttc gctatccaga atcccaccat gatcaacaaa gggacccgat 421 caaatgccaa tatccagtac caggcggtcc ctcagattca ggcaagcaat tcccaaacca 481 tccaagtaca gcccaatctc accaaccaga tccagatcat ccctggcacc aaccaagcca 541 tcatcacccc ctcaccgtcc agtcacaagc ctgtccccat caagccagcc cccatccaga 601 agtcgagtac gaccaccacc cccgtgcaga gcggggccaa tgtggtgaag ttgacaggtg 661 ggggcggcaa tgtgacgctc actctgcccg tcaacaacct cgtgaacgcc agtgacaccg 721 gggcccctac tcagctcctc actgaaagcc ccccaacccc gctgtctaag actaacaaga 781 aagcaaggaa gaagagcctt cctgcctccc agccccctgt ggctgtggct gagcaggtgg 841 agacggtgct gatcgagacc accgcggaca acatcatcca ggcaggaaat aacctgctca 901 ttgttcagag ccctggtggg ggccagccag ctgtggtcca gcaggtccag gtggtgcccc 961 ccaaggccga gcagcagcag gtggtacaga tcccccagca ggctctgcgg gtggtgcagg 1021 cggcatctgc caccctcccc actgtacccc agaagccctc ccagaacttt cagatccagg 1081 cagctgagcc gacacctact caggtctaca tccgcacgcc ttccggtgag gtgcagacag 1141 tccttgtcca ggacagcccc ccagcaacag ctgcagccac ctctaacacc acctgtagca 1201 gccctgcatc ccgtgctccc catctgagtg ggaccagcaa aaagcactca gctgcaattc 1261 tccgaaaaga gcgtcccctg ccaaagattg ccccagccgg gagcatcatc agcctgaatg 1321 cagcccagtt ggcggcagct gcccaggcaa tgcagaccat caacatcaat ggtgtccagg 1381 tccagggcgt gcctgtcacc atcaccaaca caggcgggca gcagcagctg acagtgcaga 1441 atgttTCTGG GAACAACCTG ACCATCAGTG GGCTGAGCCC CACCCAGATC CAGCTGCAAA 1501 TGGAACAAGC CCTGGCCGGA GAGACCCAGC CCGGGGAGAA GCGGCGCCGC ATGGCCTGCA 1561 CGTGTCCCAA CTGCAAGGAT GGGGAGAAGA GGTCTGGAGA GCAGGGCAAG AAGAAGCACG 1621 TGTGCCACAT CCCCGACTGT GGCAAGACGT TCCGTAAGAC GTCCTTGCTG CGTGCCCATG 1681 TGCGCCTGCA CACTGGCGAG CGGCCCTTTG TCTGCAACTG GTTCTTCTGT GGGAAGAGGT 1741 TCACACGGAG TGACGAGCTC CAACGGCATG CTCGCACCCA CACAGGGGAC AAACGCTTCG 1801 AGTGCGCCCA GTGTCAGAAG CGCTTCATGA GGAGTGACCA CCTCACCAAG CATTACAAGA 1861 CCCACCTGGT CACGAAGAAC TTGTACCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA 1921 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 1981 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAC ATTGGAGCGG 2041 CCCTTCAGAC TAAACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 2101 att