Construct: ORF TRCN0000473395

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005715.1_s317c1
Derived from:
ccsbBroadEn_12283
DNA Barcode:
TATTACCGGGCCGTATTAGTTGAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TEX2 (55852)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000473395
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55852 TEX2 testis expressed 2 NM_001288732.2 24.5% 24.5% 1_2550del
2 human 55852 TEX2 testis expressed 2 NM_001288733.2 24.5% 24.5% 1_2550del
3 human 55852 TEX2 testis expressed 2 NM_018469.5 24.4% 24.4% 1_2571del
4 human 55852 TEX2 testis expressed 2 XM_011524998.1 24.4% 24.4% 1_2571del
5 human 55852 TEX2 testis expressed 2 XM_011524999.1 24.4% 24.4% 1_2571del
6 human 55852 TEX2 testis expressed 2 XM_017024846.2 24.4% 24.4% 1_2550del;2803_2804insGTTGCA
7 human 55852 TEX2 testis expressed 2 XM_011525000.2 24.2% 24.2% 1_2571del;2824_2825insGTTGCA
8 mouse 21763 Tex2 testis expressed gene 2 NM_198292.3 22.3% 23.3% (many diffs)
9 mouse 21763 Tex2 testis expressed gene 2 XM_006533143.3 22.3% 23.3% (many diffs)
10 mouse 21763 Tex2 testis expressed gene 2 XM_006533144.3 22.3% 23.3% (many diffs)
11 mouse 21763 Tex2 testis expressed gene 2 XM_006533145.1 22.3% 23.3% (many diffs)
12 mouse 21763 Tex2 testis expressed gene 2 XM_006533146.3 22.3% 23.3% (many diffs)
13 mouse 21763 Tex2 testis expressed gene 2 XM_006533147.3 22.3% 23.3% (many diffs)
14 mouse 21763 Tex2 testis expressed gene 2 XM_006533148.3 22.1% 23.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
897
ORF length:
831
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa actcagcaaa ataaagctcc cctactttat gaatgagctc actctgacgg
121aacttgacat gggcgtggct gtgccaaaaa tcctccaggc cttcaagcct tacgttgatc
181accaaggact ctggattgat ttggaaatgt cctacaatgg gtcctttctg atgactctcg
241agaccaaaat gaatttgacc aaactaggta aagagcctct tgttgaagcc ctgaaggttg
301gagaaattgg caaagaaggt tgcaggcccc gggcattctg tctggcggac agcgatgagg
361aatcctccag cgctggctcc tccgaggaag acgatgcccc agagcccagc gggggagaca
421aacagctcct cccaggggct gaagggtacg ttggaggtca tcgaacaagt aagattatga
481ggtttgttga taaaattacc aagtcaaaat atttccaaaa agcaacagag acagagttta
541ttaaaaagaa gatcgaagaa gtctccaaca cacccctgct gctcactgtt gaagtacaag
601aatgtagagg aaccttggcg gtcaacattc caccaccccc gactgaccga gtatggtatg
661gtttccgaaa gccaccacat gtggagctga aagctcggcc aaaacttgga gagagagaag
721tgactttagt tcatgtgaca gactggatag agaagaaact ggagcaagag tttcagaaag
781tttttgtcat gccaaacatg gatgatgttt atatcactat aatgcactca gccatggacc
841ctcgctcTAC TTCCTGCCTC CTGAAAGACC CACCTGTGGA GGCTGCTGAT CAGCCATGCC
901CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
961TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1021ATATATCTTG TGGAAAGGAC GATATTACCG GGCCGTATTA GTTGAAACGC GTTAAGTCga
1081caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)