Transcript: Human NM_001288732.2

Homo sapiens testis expressed 2 (TEX2), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-09
Taxon:
Homo sapiens (human)
Gene:
TEX2 (55852)
Length:
5244
CDS:
119..3502

Additional Resources:

NCBI RefSeq record:
NM_001288732.2
NBCI Gene record:
TEX2 (55852)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001288732.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000242768 ACACCACCAAGTGCTCATAAA pLKO_005 1667 CDS 100% 13.200 18.480 N TEX2 n/a
2 TRCN0000242769 TCGGATACAGTGTCCTATAAG pLKO_005 806 CDS 100% 13.200 18.480 N TEX2 n/a
3 TRCN0000242767 AGCGAGATCAGATACTCTATC pLKO_005 2163 CDS 100% 10.800 8.640 N TEX2 n/a
4 TRCN0000242766 GAGATGGGCAGAGCAACTTAT pLKO_005 4014 3UTR 100% 13.200 9.240 N TEX2 n/a
5 TRCN0000257015 GAACCTTGGCGGTCAACATTC pLKO_005 3213 CDS 100% 10.800 7.560 N TEX2 n/a
6 TRCN0000167759 GATTTGGAAATGTCCTACAAT pLKO.1 2801 CDS 100% 5.625 3.938 N TEX2 n/a
7 TRCN0000172383 CCCTCTGATACTCGTTCCTTT pLKO.1 929 CDS 100% 4.950 3.465 N TEX2 n/a
8 TRCN0000167240 CCAAACATGGATGATGTTTAT pLKO.1 3395 CDS 100% 1.320 0.924 N TEX2 n/a
9 TRCN0000191613 GCAAGATTTATCTTGTACCTA pLKO.1 1959 CDS 100% 0.300 0.210 N Tex2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001288732.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12283 pDONR223 100% 24.5% 24.5% None 1_2550del n/a
2 ccsbBroad304_12283 pLX_304 0% 24.5% 24.5% V5 1_2550del n/a
3 TRCN0000473395 TATTACCGGGCCGTATTAGTTGAA pLX_317 7% 24.5% 24.5% V5 1_2550del n/a
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