Construct: ORF TRCN0000473468

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000973.1_s317c1
Derived from:
ccsbBroadEn_11940
DNA Barcode:
TAGCGCTCCGCATCATCGACTTGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TXNDC11 (51061)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000473468
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51061 TXNDC11 thioredoxin domain containi... NM_001324024.2 65.2% 65.2% 1_528del
2 human 51061 TXNDC11 thioredoxin domain containi... NM_001324025.2 65.2% 65.2% 1_528del
3 human 51061 TXNDC11 thioredoxin domain containi... NR_136674.2 47.4% (many diffs)
4 human 51061 TXNDC11 thioredoxin domain containi... NR_136673.2 45% (many diffs)
5 human 51061 TXNDC11 thioredoxin domain containi... NR_136672.2 44.6% (many diffs)
6 human 51061 TXNDC11 thioredoxin domain containi... NM_001324022.2 44.3% 44.3% 1_1242del
7 human 51061 TXNDC11 thioredoxin domain containi... NR_136671.2 42.4% (many diffs)
8 human 51061 TXNDC11 thioredoxin domain containi... XM_011522516.3 42% 42% 1_1362del
9 human 51061 TXNDC11 thioredoxin domain containi... NM_015914.7 34.4% 34.4% 1_1884del
10 human 51061 TXNDC11 thioredoxin domain containi... NM_001303447.2 33.5% 33.5% 1_1965del
11 human 51061 TXNDC11 thioredoxin domain containi... XM_017023268.1 33% 33% 1_2001del
12 human 51061 TXNDC11 thioredoxin domain containi... XM_011522515.2 33% 33% 1_2004del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1056
ORF length:
990
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa gctcacccta gagtctttta ttcaaaactt cagcgttctc tatagtccct
121tgaaaaggca tctcattgga agtggctctg cccagttccc gtctcagcat ttaatcactg
181aagtgacaac tgataccttt tgggaagtag tccttcaaaa acaggacgtt ctcctgctct
241attacgctcc gtggtgcggc ttctgtccat ccctcaatca catcttcatc cagctagctc
301ggaacctgcc catggacaca ttcactgtgg caaggattga cgtgtctcag aatgaccttc
361cttgggaatt tatggtcgat cgtcttccta ctgtcttgtt ttttccctgc aacagaaagg
421acctaagtgt gaaatacccc gaagacgtcc ccatcaccct tccaaacctg ttgaggttca
481ttttgcatca ctcagaccct gcttccagcc cccagaatgt ggctaactct cctaccaagg
541agtgtcttca gagcgaggca gtcttacagc gggggcacat ctcccacttg gagagagaga
601tccagaaact gagagcagaa ataagcagcc tccagcgagc acaagtgcag gtggagtccc
661agctctccag tgcccgcaga gatgagcacc ggctgcggCA GCAGCAGCGG GCCCTGGAAG
721AGCAGCACAG CCTGCTCCAC GCACACAGTG AGCAGCTGCA GGCCCTCTAT GAGCAGAAGA
781CACGTGAGCT GCAGGAGCTG GCCCGCAAGC TGCAGGAGCT GGCCGATGCC TCAGAAAACC
841TCCTTACCGA GAACACGTGG CTCAAGATCC TGGTGGCGAC CATGGAGAGG AAACTGGAGG
901GCAGGGATGG AGCTGAAAGC CTGGCGGCCC AGAGAGAGGT CCACCCCAAG CAGCCTGAGC
961CCTCAGCCAC CCCCCAGCTC CCTGGCAGCT CCCCTCCACC TGCCAATGTC AGCGCCACAC
1021TGGTGTCTGA AAGGAATAAG GAGAACAGGA CAGACTACCC AACATTCTTG TACAAAGTGG
1081TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
1141CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
1201ATAGCGCTCC GCATCATCGA CTTGCACGCG TTAAGTCgac aatcaacctc tggattacaa
1261aatttgtgaa agatt

Download FASTA (ORF) (Full)