Transcript: Human NR_136671.2

Homo sapiens thioredoxin domain containing 11 (TXNDC11), transcript variant 6, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
TXNDC11 (51061)
Length:
2323
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_136671.2
NBCI Gene record:
TXNDC11 (51061)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_136671.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000129550 CGATCGTCTTCCTACTGTCTT pLKO.1 1530 3UTR 100% 4.950 6.930 N TXNDC11 n/a
2 TRCN0000336726 CGATCGTCTTCCTACTGTCTT pLKO_005 1530 3UTR 100% 4.950 6.930 N TXNDC11 n/a
3 TRCN0000128065 CTGGATTATGCAGAGTACGTT pLKO.1 470 3UTR 100% 3.000 4.200 N TXNDC11 n/a
4 TRCN0000128571 GCCGAAAGTCATCCTTTAATA pLKO.1 1208 3UTR 100% 15.000 10.500 N TXNDC11 n/a
5 TRCN0000336725 GCCGAAAGTCATCCTTTAATA pLKO_005 1208 3UTR 100% 15.000 10.500 N TXNDC11 n/a
6 TRCN0000336805 GACGTTCTCCTGCTCTATTAC pLKO_005 1378 3UTR 100% 13.200 9.240 N TXNDC11 n/a
7 TRCN0000130589 CCAAACCTGTTGAGGTTCATT pLKO.1 1615 3UTR 100% 0.563 0.394 N TXNDC11 n/a
8 TRCN0000336727 CCAAACCTGTTGAGGTTCATT pLKO_005 1615 3UTR 100% 0.563 0.394 N TXNDC11 n/a
9 TRCN0000131001 CCTGAACTACACAGCTGAGAA pLKO.1 1051 3UTR 100% 4.950 2.970 N TXNDC11 n/a
10 TRCN0000336724 CCTGAACTACACAGCTGAGAA pLKO_005 1051 3UTR 100% 4.950 2.970 N TXNDC11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_136671.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11940 pDONR223 100% 42.4% None (many diffs) n/a
2 ccsbBroad304_11940 pLX_304 0% 42.4% V5 (many diffs) n/a
3 TRCN0000473468 TAGCGCTCCGCATCATCGACTTGC pLX_317 36.4% 42.4% V5 (many diffs) n/a
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