Construct: ORF TRCN0000473473
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008062.1_s317c1
- Derived from:
- ccsbBroadEn_02991
- DNA Barcode:
- TCAAAACGGTCCGAGTCCCTACCG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FOXP1 (27086)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473473
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 27086 | FOXP1 | forkhead box P1 | NM_001012505.1 | 100% | 100% | |
| 2 | human | 27086 | FOXP1 | forkhead box P1 | XM_017006168.2 | 100% | 100% | |
| 3 | human | 27086 | FOXP1 | forkhead box P1 | NM_001244808.2 | 13.1% | 10.9% | (many diffs) |
| 4 | human | 27086 | FOXP1 | forkhead box P1 | NM_001349341.2 | 13.1% | 10.9% | (many diffs) |
| 5 | human | 27086 | FOXP1 | forkhead box P1 | NM_001244814.2 | 13.1% | 10.9% | (many diffs) |
| 6 | human | 27086 | FOXP1 | forkhead box P1 | NM_001244816.1 | 13.1% | 10.9% | (many diffs) |
| 7 | human | 27086 | FOXP1 | forkhead box P1 | NM_001349338.2 | 13.1% | 10.9% | (many diffs) |
| 8 | human | 27086 | FOXP1 | forkhead box P1 | NM_001349340.2 | 13.1% | 10.9% | (many diffs) |
| 9 | human | 27086 | FOXP1 | forkhead box P1 | NM_032682.5 | 13.1% | 10.9% | (many diffs) |
| 10 | human | 27086 | FOXP1 | forkhead box P1 | XM_006713102.2 | 13.1% | 10.9% | (many diffs) |
| 11 | human | 27086 | FOXP1 | forkhead box P1 | XM_006713103.2 | 13.1% | 10.9% | (many diffs) |
| 12 | human | 27086 | FOXP1 | forkhead box P1 | XM_006713104.2 | 13.1% | 10.9% | (many diffs) |
| 13 | human | 27086 | FOXP1 | forkhead box P1 | XM_011533585.3 | 13.1% | 10.9% | (many diffs) |
| 14 | human | 27086 | FOXP1 | forkhead box P1 | XM_017006165.1 | 13.1% | 10.9% | (many diffs) |
| 15 | human | 27086 | FOXP1 | forkhead box P1 | NM_001244810.1 | 12.8% | 10.6% | (many diffs) |
| 16 | human | 27086 | FOXP1 | forkhead box P1 | NR_146143.2 | 3% | (many diffs) | |
| 17 | human | 27086 | FOXP1 | forkhead box P1 | NR_146142.2 | 3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 408
- ORF length:
- 342
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggCATGAT GCAAGAATCT GGGACTGAGA CAAAAAGTAA CGGTTCAGCC ATCCAGAATG 121 GGTCGGGCGG CAGCAACCAC TTACTAGAGT GCGGCGGTCT TCGGGAGGGG CGGTCCAACG 181 GAGAGACGCC GGCCGTGGAC ATCGGGGCAG CTGACCTCGC CCACGCCCAG CAGCAGCAGC 241 AACAGTGGCA TCTCATAAAC CATCAGCCCT CTAGGAGTCC CAGCAGTTGG CTTAAGAGAC 301 TAATTTCAAG CCCTTGGGAG TTGGAAGTCC TGCAGGTCCC CTTGTGGGGA GCAGTTGCTG 361 AGACGAAGAT GAGTGGACCT GTGTGTCAGC CTAACCCTTC CCCATTTTGC CCAACTTTCT 421 TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA 481 CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT 541 GTGGAAAGGA CGATCAAAAC GGTCCGAGTC CCTACCGACG CGTTAAGTCg acaatcaacc 601 tctggattac aaaatttgtg aaagatt