Construct: ORF TRCN0000473726

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006939.1_s317c1
Derived from:
ccsbBroadEn_07528
DNA Barcode:
ATCATTGGTCATGAAGGGCCATTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DMTF1 (9988)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000473726
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9988 DMTF1 cyclin D binding myb like t... NM_001142327.1 99.9% 99.8% 1846A>G
2 human 9988 DMTF1 cyclin D binding myb like t... NM_021145.3 99.9% 99.8% 1846A>G
3 human 9988 DMTF1 cyclin D binding myb like t... XM_011516735.3 99.9% 99.8% 1846A>G
4 human 9988 DMTF1 cyclin D binding myb like t... XM_011516737.1 99.9% 99.8% 1846A>G
5 human 9988 DMTF1 cyclin D binding myb like t... XM_017012865.2 99.9% 99.8% 1846A>G
6 human 9988 DMTF1 cyclin D binding myb like t... XM_024447011.1 99.9% 99.8% 1846A>G
7 human 9988 DMTF1 cyclin D binding myb like t... XM_024447012.1 99.9% 99.8% 1846A>G
8 human 9988 DMTF1 cyclin D binding myb like t... XM_024447013.1 99.9% 99.8% 1846A>G
9 human 9988 DMTF1 cyclin D binding myb like t... XM_024447014.1 99.9% 99.8% 1846A>G
10 human 9988 DMTF1 cyclin D binding myb like t... XM_024447015.1 99.9% 99.8% 1846A>G
11 human 9988 DMTF1 cyclin D binding myb like t... XM_024447016.1 99.9% 99.8% 1846A>G
12 human 9988 DMTF1 cyclin D binding myb like t... XM_024447017.1 99.9% 99.8% 1846A>G
13 human 9988 DMTF1 cyclin D binding myb like t... XM_024447018.1 99.9% 99.8% 1846A>G
14 human 9988 DMTF1 cyclin D binding myb like t... XM_024447019.1 99.9% 99.8% 1846A>G
15 human 9988 DMTF1 cyclin D binding myb like t... XM_024447020.1 99.9% 99.8% 1846A>G
16 human 9988 DMTF1 cyclin D binding myb like t... XM_024447021.1 99.9% 99.8% 1846A>G
17 human 9988 DMTF1 cyclin D binding myb like t... XM_024447022.1 99.9% 99.8% 1846A>G
18 human 9988 DMTF1 cyclin D binding myb like t... XM_011516739.3 94.5% 94.3% 109_110ins123;1723A>G
19 human 9988 DMTF1 cyclin D binding myb like t... XM_017012866.2 94.5% 94.3% 109_110ins123;1723A>G
20 human 9988 DMTF1 cyclin D binding myb like t... XM_017012867.1 94.5% 94.3% 109_110ins123;1723A>G
21 human 9988 DMTF1 cyclin D binding myb like t... XM_017012868.1 93.1% 89.6% 1846A>G;2026_2027ins145;2124_2125insTAAACTGTCAT
22 human 9988 DMTF1 cyclin D binding myb like t... XM_024447023.1 93.1% 89.6% 1846A>G;2026_2027ins145;2124_2125insTAAACTGTCAT
23 human 9988 DMTF1 cyclin D binding myb like t... XM_017012869.1 91% 88.7% (many diffs)
24 human 9988 DMTF1 cyclin D binding myb like t... XM_024447024.1 91% 88.7% (many diffs)
25 human 9988 DMTF1 cyclin D binding myb like t... XM_024447025.1 91% 88.7% (many diffs)
26 human 9988 DMTF1 cyclin D binding myb like t... NM_001142326.1 88.3% 88.2% 0_1ins264;1582A>G
27 human 9988 DMTF1 cyclin D binding myb like t... XM_017012870.2 87.7% 84.1% (many diffs)
28 human 9988 DMTF1 cyclin D binding myb like t... XM_017012871.1 64.9% 64.8% 0_1ins798;1048A>G
29 human 9988 DMTF1 cyclin D binding myb like t... XM_017012872.2 64.9% 64.8% 0_1ins798;1048A>G
30 human 9988 DMTF1 cyclin D binding myb like t... XM_017012873.1 64.9% 64.8% 0_1ins798;1048A>G
31 human 9988 DMTF1 cyclin D binding myb like t... XM_017012874.1 64.9% 64.8% 0_1ins798;1048A>G
32 human 9988 DMTF1 cyclin D binding myb like t... XM_017012875.1 64.9% 64.8% 0_1ins798;1048A>G
33 human 9988 DMTF1 cyclin D binding myb like t... XM_017012876.1 64.9% 64.8% 0_1ins798;1048A>G
34 human 9988 DMTF1 cyclin D binding myb like t... XR_001744895.1 60.2% (many diffs)
35 human 9988 DMTF1 cyclin D binding myb like t... XM_017012877.1 58.1% 54.7% (many diffs)
36 human 9988 DMTF1 cyclin D binding myb like t... XM_017012878.2 58.1% 54.7% (many diffs)
37 human 9988 DMTF1 cyclin D binding myb like t... XM_024447026.1 58.1% 54.7% (many diffs)
38 human 9988 DMTF1 cyclin D binding myb like t... NR_024550.1 57.3% (many diffs)
39 human 9988 DMTF1 cyclin D binding myb like t... NR_024549.1 56.8% (many diffs)
40 human 9988 DMTF1 cyclin D binding myb like t... XR_002956500.1 36.3% (many diffs)
41 mouse 23857 Dmtf1 cyclin D binding myb-like t... NM_011806.3 91.6% 95% (many diffs)
42 mouse 23857 Dmtf1 cyclin D binding myb-like t... XM_011240668.2 91.6% 95% (many diffs)
43 mouse 23857 Dmtf1 cyclin D binding myb-like t... XM_006503572.3 86.9% 90.1% (many diffs)
44 mouse 23857 Dmtf1 cyclin D binding myb-like t... XM_017320878.1 86.9% 90.1% (many diffs)
45 mouse 23857 Dmtf1 cyclin D binding myb-like t... NM_001110327.1 83% 86% (many diffs)
46 mouse 23857 Dmtf1 cyclin D binding myb-like t... XM_011240669.1 83% 85% (many diffs)
47 mouse 23857 Dmtf1 cyclin D binding myb-like t... XM_006503574.1 59.4% 61.4% (many diffs)
48 mouse 23857 Dmtf1 cyclin D binding myb-like t... XR_001784691.1 50% (many diffs)
49 mouse 23857 Dmtf1 cyclin D binding myb-like t... XR_001784690.1 49.1% (many diffs)
50 mouse 23857 Dmtf1 cyclin D binding myb-like t... XR_001784692.1 48.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2346
ORF length:
2280
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag cacagtggaa gaggattctg acacagtaac agtagaaact gtgaactctg
121tgactttgac tcaggacaca gaagggaatc tcattcttca ctgccctcag aatgaagcgg
181atgaaataga ctcagaagat agtattgaac ctccacataa aaggctttgt ttgtcctctg
241aggatgatca gagtattgat gattctactc cttgcatatc agttgttgca cttccacttt
301cagaaaatga tcagagcttt gaagtgacca tgactgcaac cacagaagta gcagatgatg
361aggttactga ggggactgtg acacagatac agattttgca gaatgagcaa ctagatgaaa
421tatctccctt gggtaacgag gaagtttcag cagttagcca agcatggttt acaactaaag
481aagataagga ttctctgact aataaaggac ataaatggaa gcaggggatg tggtccaagg
541aagaaattga tattttgatg aacaatattg aacgctatct taaggcacgc ggaataaaag
601atgctacaga aatcatcttt gagatgtcaa aagacgaaag aaaagatttc tacaggacta
661tagcatgggg tctgaaccgg cctttgtttg cagtttatag aagagtgctt cgcatgtatg
721atgacagaaa ccatgtggga aaatatacac ctgaagaaat tgagaagctc aaggagctcc
781ggataaagca tggcaatgac tgggcaacaa taggggcggc gctaggaaga agtgcatctt
841ctgtcaaaga tcggtgccga ctgatgaagg atacttgcaa cacagggaag tggacagaag
901aagaagaaaa gagacttgca gaagtggttc atgagttgac aagcactgag ccaggtgaca
961tagtcacaca gggtgtgtct tgggcagctg tggctgaacg agtcggtacc cgctcagaaa
1021agcaatgtcg ttctaaatgg ctcaactacc tgaattggaa acagagtggg ggtactgaat
1081ggaccaagga agatgaaatc aatctcatcc tcaggatagc agaacttgat gtagctgatg
1141aaaatgacat taactgggat ctgttagctg agggatggag tagtgtccgt tcaccacaat
1201ggctacgaag taaatggtgg accatcaaaa ggcaaattgc aaaccataag gatgtttcgt
1261tccctgtctt aataaaaggt cttaaacagt tacatgagaa ccaaaaaaac aacccaacgc
1321ttttggagaa taaatcagga tctggagttc caaacagtaa taccaattcc agtgtgcagc
1381atgttcagat aagagttgcc cgcttggaag ataatacagc catctcttct agccccatgg
1441cagcattgca gattccagtc cagatcaccc atgtttcttc agcagactct cctgctaccg
1501ttgactcaga aacaataaca ctaaacagtg gaacactaca gacatttgag attcttccct
1561ctttccatct acagcccact ggcactccag gcacctacct acttcaaaca agctcaagcc
1621aaggccttcc cctaactctg actgctagtc ccacagtaac cctgacagct gctgctcctg
1681cttctcctga acagattatt gttcatgctt tatccccaga acatttgttg aacacaagtg
1741ataatgttac agtgcagtgt cacacaccaa gagtcatcat tcagactgtt gccacagagg
1801acatcacttc ttccatatcc caagcagaac tgacagtcga tagtgatatt cagtcatctg
1861attttcctga gcctccagac gccctagaag cagacacttt cccagatgaa gttcatcacc
1921ctaagatgac tgtggagcca tcatTTAATG ATGCTCATGT ATCCAAATTC AGTGACCAAA
1981ATAGCACAGA ACTGATGAAT AGTGTTATGG TCAGAACAGA AGAAGAAATC TCTGACACCG
2041ACCTTAAACA AGAGGAATCA CCCTCTGATT TAGCCAGTGC TTATGTTACT GAGGGTTTAG
2101AGTCTCCCAC TATAGAAGAA CAAGTTGATC AAACAATTGA TGATGAAACA ATACTTATCG
2161TTCCTTCACC ACATGGCTTT ATCCAGGCAT CTGATGTTAT AGATACTGAA TCTGTCTTGC
2221CTTTGACAAC ACTAACAGAT CCCATACTCC AACATCATCA GGAAGAATCA AATATCATTG
2281GATCATCCTT GGGCAGTCCT GTTTCAGAAG ATTCAAAGGA TGTCGAAGAT TTGGTAAACT
2341GTCATTACCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
2401TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
2461CTTGGCTTTA TATATCTTGT GGAAAGGACG AATCATTGGT CATGAAGGGC CATTAACGCG
2521TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)