Transcript: Human XM_017012865.2

PREDICTED: Homo sapiens cyclin D binding myb like transcription factor 1 (DMTF1), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
DMTF1 (9988)
Length:
5077
CDS:
1610..3892

Additional Resources:

NCBI RefSeq record:
XM_017012865.2
NBCI Gene record:
DMTF1 (9988)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017012865.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000330008 TAAGGATTCTCTGACTAATAA pLKO_005 2029 CDS 100% 15.000 21.000 N DMTF1 n/a
2 TRCN0000017785 CGGCCTTTGTTTGCAGTTTAT pLKO.1 2222 CDS 100% 13.200 18.480 N DMTF1 n/a
3 TRCN0000329945 CTTGACCAGCATACAAGTATA pLKO_005 4364 3UTR 100% 13.200 18.480 N DMTF1 n/a
4 TRCN0000017784 CCGACCTTAAACAAGAGGAAT pLKO.1 3582 CDS 100% 4.950 3.960 N DMTF1 n/a
5 TRCN0000329944 TCTTAAGGCACGCGGAATAAA pLKO_005 2122 CDS 100% 15.000 10.500 N DMTF1 n/a
6 TRCN0000369279 CCACAATGGCTACGAAGTAAA pLKO_005 2738 CDS 100% 13.200 9.240 N DMTF1 n/a
7 TRCN0000349052 GCTCAAGGAGCTCCGGATAAA pLKO_005 2311 CDS 100% 13.200 9.240 N Dmtf1 n/a
8 TRCN0000369352 GGCAATGACTGGGCAACAATA pLKO_005 2336 CDS 100% 13.200 9.240 N DMTF1 n/a
9 TRCN0000017783 CCACTGTCATTAGTTTACAAA pLKO.1 4581 3UTR 100% 5.625 3.938 N DMTF1 n/a
10 TRCN0000017786 CCTCAGAATGAAGCGGATGAA pLKO.1 1709 CDS 100% 4.950 3.465 N DMTF1 n/a
11 TRCN0000329943 CCTCAGAATGAAGCGGATGAA pLKO_005 1709 CDS 100% 4.950 3.465 N DMTF1 n/a
12 TRCN0000017787 CCATCATTTAATGATGCTCAT pLKO.1 3482 CDS 100% 0.405 0.284 N DMTF1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017012865.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07528 pDONR223 100% 99.9% 99.8% None 1846A>G n/a
2 ccsbBroad304_07528 pLX_304 0% 99.9% 99.8% V5 1846A>G n/a
3 TRCN0000473726 ATCATTGGTCATGAAGGGCCATTA pLX_317 17.9% 99.9% 99.8% V5 1846A>G n/a
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