Construct: ORF TRCN0000473769
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004364.1_s317c1
- Derived from:
- ccsbBroadEn_10445
- DNA Barcode:
- ACTGTTCTTATCACCAACAGAGGT
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- SPIB (6689)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473769
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6689 | SPIB | Spi-B transcription factor | NM_003121.5 | 99.7% | 40.4% | 309T>C;314_315insC |
| 2 | human | 6689 | SPIB | Spi-B transcription factor | NM_001244000.2 | 87.9% | 12.8% | (many diffs) |
| 3 | human | 6689 | SPIB | Spi-B transcription factor | NM_001243999.2 | 67.3% | 59.8% | (many diffs) |
| 4 | human | 6689 | SPIB | Spi-B transcription factor | NM_001243998.1 | 65.1% | 9.7% | 0_1ins58;65_66ins216 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 399
- ORF length:
- 333
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttgncatgct cgccctggag gctgcacagc tcgacgggcc acacttcagc tgtctgtacc 121 cagatggcgt cttctatgac ctggacagct gcaagcattc cagctaccct gattcagagg 181 gggctcctga ctccctgtgg gactggactg tggccccacc tgtcccagcc accccctatg 241 aagccttcga cccggcagca gccgctttta gccaccccca ggctgcccag ctctgctacg 301 aaccccccac ctacagccct GCAGGGAACC TCGAACTGGC CCCCAGCCTG GAGGCCCCGG 361 GGCCTGGCCT CCCCGCATAC CCCCACGGAG AACTTCGCTA GCCAGACCCT GGTTCCCCCG 421 GCATATGCCC CGTACCCCAG CCCTGTGCTA TCAGAGGAGG AAGACTTACC GTTGGACAGC 481 CCTGCCCTGG AGGTCTCGGA CAGCGAGTCG GATGAGGCCC TCGTGGCTGG CCCCGAGGGG 541 AAGGGATCCG AGGCAGGGAC TCGCAAGAAG CTGCGCCTGT ACCAGTTCCT GCTGGGGCTA 601 CTGACGCGCG GGGACATGCG TGAGTGCGTG TGGTGGGTGG AGCCAGGCGC CGGCGTCTTC 661 CAGTTCTCCT CCAAGCACAA GGAACTCCTG GCGCGCCGCT GGGGCCAGCA GAAGGGGAAC 721 CGCAAGCGCA TGACCTACCA GAAGCTGGCG CGCGCCCTCC GAAACTACGC CAAGACCGGC 781 GAGATCCGCA AGGTCAAGCG CAAGCTCACC TACCAGTTCG ACAGCGCGCT GCTGCCTGCA 841 GTCCGCCGGG CCTGCCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT 901 AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT 961 TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAAC TGTTCTTATC ACCAACAGAG 1021 GTACGCGTTA AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt