Construct: ORF TRCN0000473783
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015172.1_s317c1
- Derived from:
- ccsbBroadEn_01473
- DNA Barcode:
- CATCTAGTGGATACGACGGGCAAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- S100A3 (6274)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473783
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6274 | S100A3 | S100 calcium binding protei... | NM_002960.2 | 100% | 100% | |
| 2 | mouse | 20197 | S100a3 | S100 calcium binding protei... | NM_011310.2 | 90% | 90% | (many diffs) |
| 3 | mouse | 20197 | S100a3 | S100 calcium binding protei... | XM_006501171.3 | 90% | 90% | (many diffs) |
| 4 | mouse | 20197 | S100a3 | S100 calcium binding protei... | XM_006501173.3 | 90% | 90% | (many diffs) |
| 5 | mouse | 20197 | S100a3 | S100 calcium binding protei... | XM_006501174.1 | 90% | 90% | (many diffs) |
| 6 | mouse | 20197 | S100a3 | S100 calcium binding protei... | XM_006501175.2 | 90% | 90% | (many diffs) |
| 7 | mouse | 20197 | S100a3 | S100 calcium binding protei... | XM_006501176.2 | 90% | 90% | (many diffs) |
| 8 | mouse | 20197 | S100a3 | S100 calcium binding protei... | XM_011240047.1 | 90% | 90% | (many diffs) |
| 9 | mouse | 20197 | S100a3 | S100 calcium binding protei... | XM_017319509.1 | 90% | 90% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 260
- ORF end:
- 563
- ORF length:
- 303
- Sequence:
-
1 TTCTCGAGCT TTTGGAGTAC GTCGTCTTTA GGTTGGGGGG AGGGGTTTTA TGCGATGGAG 61 TTTCCCCACA CTGAGTGGGT GGAGACTGAA GTTAGGCCAG CTTGGCACTT GATGTAATTC 121 TCCTTGGAAT TTGCCCTTTT TGAGTTTGGA TCTTGGTTCA TTCTCAAGCC TCAGACAGTG 181 GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT GATCAACAAG 241 TTTGTACAAA TAAGTTGGCA TGGCCAGGCC TCTGGAGCAG GCGGTAGCTG CCATCGTGTG 301 CACCTTCCAG GAATACGCAG GGCGCTGTGG GGACAAATAC AAGCTCTGCC AGGCGGAGCT 361 CAAGGAGCTG CTGCAGAAGG AGCTGGCCAC CTGGACCCCG ACTGAGTTTC GGGAATGTGA 421 CTACAACAAA TTCATGAGTG TTCTGGACAC CAACAAGGAC TGCGAGGTGG ACTTTGTGGA 481 GTATGTGCGC TCACTTGCCT GCCTCTGTCT CTACTGCCAC GAGTACTTCA AGGACTGCCC 541 CTCAGAGCCC CCCTGCTCCC AGTACCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA 601 GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT 661 TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGACA TCTAGTGGAT 721 ACGACGGGCA ACACGCGTTA AGTCgacaat caacctctgg attacaaaat ttgtgaaaga 781 tt