Construct: ORF TRCN0000473836

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010831.1_s317c1
Derived from:
ccsbBroadEn_15754
DNA Barcode:
ATTGTGCGAGGCATCCGAGAACGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ASTN2 (23245)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000473836
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23245 ASTN2 astrotactin 2 NM_198188.2 100% 100%
2 human 23245 ASTN2 astrotactin 2 NM_198187.3 98.2% 98.2% 1152_1172del
3 human 23245 ASTN2 astrotactin 2 NM_001184734.1 94.9% 94.4% 1117_1118ins34;1125_1126ins26
4 human 23245 ASTN2 astrotactin 2 NM_198186.3 86.9% 86.7% (many diffs)
5 human 23245 ASTN2 astrotactin 2 NM_001184735.1 47.1% 44.1% (many diffs)
6 human 23245 ASTN2 astrotactin 2 NM_014010.5 29.9% 29.7% (many diffs)
7 human 23245 ASTN2 astrotactin 2 NM_001365069.1 28.8% 28.7% (many diffs)
8 human 23245 ASTN2 astrotactin 2 NM_001365068.1 28.8% 28.6% (many diffs)
9 mouse 56079 Astn2 astrotactin 2 NM_019514.3 26.9% 29.1% (many diffs)
10 mouse 56079 Astn2 astrotactin 2 XM_006538104.3 25.9% 28.1% (many diffs)
11 mouse 56079 Astn2 astrotactin 2 NM_207109.2 25.8% 28% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1254
ORF length:
1185
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gcccttcatc acctacctct caggtttgct gacagcccag atgctgtcag
121atgaccagct catttcaggt gtggagattc gctgtgagga gaaggggcgc tgtccatcta
181cctgtcacct ttgccgccgg ccaggcaagg agcagctgag ccccacacca gtgctgctgg
241aaatcaaccg tgtggtgcca ctttataccc tcatccaaga caatggcaca aaggaggcct
301tcaagagtgc actgatgagt tcctactggt gctcagggaa aggggatgtg atcgatgact
361ggtgcaggtg tgacctcagc gcctttgatg ccaatgggct ccccaactgc agcccccttc
421tgcagccggt gctgcggctg tccccaacag tggagccctc cagtactgtg gtctccttgg
481agtgggtgga tgttcagcca gctattggga ccaaggtctc cgactatatt ctgcagcata
541agaaagtgga tgaatacaca gacactgacc tgtacacagg agaattcctg agttttgctg
601atgacttact ctctggcctg ggcacatctt gtgtagcagc tggtcgaagc catggagagg
661tccctgaagt cagtatctac tcagtcatct tcaagtgtct ggagcccgac ggtctctaca
721agttcactct gtatgctgtg gatacacgag ggaggcactc agagctaagc acggtgaccc
781tgaggacggc ctgtccactg gtagatgaca aCAAGGCAGA AGAAATAGCT GACAAGATCT
841ACAATCTGTA CAATGGGTAC ACAAGTGGAA AGGAGCAGCA GATGGCCTAC AACACACTGA
901TGGAGGTCTC AGCCTCGATG CTGTTCCGAG TCCAGCACCA CTACAACTCT CACTATGAAA
961AGTTTGGCGA CTTCGTCTGG AGAAGTGAGG ATGAGCTGGG GCCCAGGAAG GCCCACCTGA
1021TTCTACGGCG ACTGGAGAGG GTGAGTAGCC ACTGCTCCAG CCTCCTGCGG AGTGCCTACA
1081TCCAGAGCCG CGTGGAAACA GTGCCCTATC TTTTCTGCCG CAGCGAGGAG GTCCGGCCTG
1141CAGGCATGGT GTGGTATAGC ATCCTCAAGG ACACCAAAAT CACGTGTGAG GAGAAGATGG
1201TGTCAATGGC CCGAAACACA TATTATTTGA CTCTATCAAA AGTCTCTCCT TTTTTGCCAA
1261CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG
1321ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA
1381TATTTGTGGA AAGGACGAAT TGTGCGAGGC ATCCGAGAAC GTACGCGTTA AGTCgacaat
1441caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)