Construct: ORF TRCN0000473893

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003104.1_s317c1
Derived from:
ccsbBroadEn_08559
DNA Barcode:
TAACCTCGGTCATTCTTTGTGCAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TBC1D22B (55633)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000473893
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55633 TBC1D22B TBC1 domain family member 22B NM_017772.4 99.8% 100% 573A>G;771C>T
2 human 55633 TBC1D22B TBC1 domain family member 22B XM_011514738.3 92.3% 90.9% (many diffs)
3 human 55633 TBC1D22B TBC1 domain family member 22B XM_011514739.2 76.8% 76.8% (many diffs)
4 human 55633 TBC1D22B TBC1 domain family member 22B XR_926270.3 73.7% (many diffs)
5 human 55633 TBC1D22B TBC1 domain family member 22B XR_427833.2 43.2% (many diffs)
6 human 55633 TBC1D22B TBC1 domain family member 22B NR_130108.2 42.9% (many diffs)
7 human 55633 TBC1D22B TBC1 domain family member 22B XR_241906.2 40.3% (many diffs)
8 mouse 381085 Tbc1d22b TBC1 domain family, member 22B NM_198647.1 89.5% 98.8% (many diffs)
9 mouse 381085 Tbc1d22b TBC1 domain family, member 22B XM_006524488.1 86.4% 95% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1584
ORF length:
1515
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggccgctgag aacagcaagc agttttggaa gaggagcgct aagctgccgg
121ggagcattca gcctgtatat ggagcacagc atcctcctct tgacccacgg ctcaccaaaa
181atttcattaa agaacgatca aaagtcaaca cagttcctct gaagaataag aaggcctcca
241gttttcatga gtttgcacgg aataccagtg atgcttggga cattggcgat gatgaggaag
301aggacttttc ctcaccttct ttccaaactc tgaactcaaa agttgctttg gcaactgcag
361cccaagttct agaaaaccac agcaagctga gagtaaaacc agaacggtcc cagtcaacga
421catcggacgt ccctgccaac tacaaggtca taaagtccag cagtgatgcc cagctgtcca
481gaaactctag tgatacatgc ctgaggaacc cactccacaa acagcaatca ctccctctcc
541ggcccatcat ccccctcgtt gcccggatct cggatcagaa cgcttctggg gcccccccaa
601tgactgtccg ggagaaaacc cgcctagaaa aattccgtca gcttctctcc agccagaaca
661ctgacttaga tgaactgagg aagtgtagct ggccaggggt tcccagggag gttcgaccta
721taacctggag actcctgtcg ggctatctcc cagcaaacac tgagaggagg aagttgaccc
781tgcagcggaa gcgggaggaa tattttggct tcattgaaca gtattatgac tctcgaaatg
841aggaacatca ccaggatacc tacagacaga ttcacattga cattccaagg acgaatcctc
901tcattccgtt gttccagcaa ccacttgtac aggagatctt tgaaagaatt ctatttattt
961gggccatccg ccaccctgcc agtgggtatg tccagggaat taatgacctg gtcactccat
1021tctttgtcgt cttcctctca gaatatgtgg aagaggatgt ggagaacttt gacgtgacca
1081acttgtctca agacatgctg cgaagcattg aggctgacag cTTTTGGTGC ATGAGCAAGC
1141TGCTGGATGG AATCCAGGAT AACTACACCT TTGCACAACC AGGAATCCAG AAGAAGGTGA
1201AGGCACTGGA AGAGCTTGTC AGCCGGATTG ATGAGCAGGT ACATAATCAC TTCAGGAGGT
1261ACGAGGTAGA ATACCTGCAG TTTGCCTTCC GCTGGATGAA CAACCTGCTT ATGCGGGAGC
1321TTCCTCTTCG CTGCACCATC CGCCTGTGGG ACACATATCA GTCTGAACCA GAAGGGTTCT
1381CCCACTTTCA TCTCTACGTG TGTGCAGCCT TCTTGATCAA GTGGAGGAAA GAGATCTTGG
1441ATGAGGAGGA TTTTCAGGGT CTCCTCATGC TGCTACAGAA CCTACCTACA ATACACTGGG
1501GCAACGAAGA AATTGGGCTG CTTCTCGCCG AGGCATACAG ACTCAAGTAC ATGTTTGCCG
1561ATGCCCCAAA TCACTACCGC CGATTGCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA
1621AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
1681TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAT AACCTCGGTC
1741ATTCTTTGTG CAAACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
1801att

Download FASTA (ORF) (Full)