Construct: ORF TRCN0000473941
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014187.1_s317c1
- Derived from:
- ccsbBroadEn_03048
- DNA Barcode:
- AACTTGGAATTAACTTCTTAAGCA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C11orf54 (28970)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473941
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 28970 | C11orf54 | chromosome 11 open reading ... | NM_001351991.2 | 100% | 100% | |
| 2 | human | 28970 | C11orf54 | chromosome 11 open reading ... | NM_014039.4 | 100% | 100% | |
| 3 | human | 28970 | C11orf54 | chromosome 11 open reading ... | NM_001351993.2 | 92.8% | 92.8% | 0_1ins57 |
| 4 | human | 28970 | C11orf54 | chromosome 11 open reading ... | NM_001286071.1 | 87.6% | 77.8% | (many diffs) |
| 5 | human | 28970 | C11orf54 | chromosome 11 open reading ... | NM_001351992.2 | 87.6% | 77.8% | (many diffs) |
| 6 | human | 28970 | C11orf54 | chromosome 11 open reading ... | XM_017017617.1 | 87.6% | 77.8% | (many diffs) |
| 7 | human | 28970 | C11orf54 | chromosome 11 open reading ... | NM_001286067.2 | 84.1% | 84.1% | 507_656del |
| 8 | human | 28970 | C11orf54 | chromosome 11 open reading ... | NM_001286068.2 | 84.1% | 84.1% | 507_656del |
| 9 | human | 28970 | C11orf54 | chromosome 11 open reading ... | NM_001286069.2 | 84.1% | 84.1% | 507_656del |
| 10 | human | 28970 | C11orf54 | chromosome 11 open reading ... | NM_001351985.2 | 84.1% | 84.1% | 507_656del |
| 11 | human | 28970 | C11orf54 | chromosome 11 open reading ... | NM_001351986.2 | 84.1% | 84.1% | 507_656del |
| 12 | human | 28970 | C11orf54 | chromosome 11 open reading ... | NM_001351987.2 | 84.1% | 84.1% | 507_656del |
| 13 | human | 28970 | C11orf54 | chromosome 11 open reading ... | NM_001351988.2 | 84.1% | 84.1% | 507_656del |
| 14 | human | 28970 | C11orf54 | chromosome 11 open reading ... | NM_001351989.2 | 84.1% | 84.1% | 507_656del |
| 15 | human | 28970 | C11orf54 | chromosome 11 open reading ... | XM_011542781.2 | 84.1% | 84.1% | 507_656del |
| 16 | human | 28970 | C11orf54 | chromosome 11 open reading ... | XM_011542782.3 | 84.1% | 84.1% | 507_656del |
| 17 | human | 28970 | C11orf54 | chromosome 11 open reading ... | NM_001286070.1 | 78% | 78% | 0_1ins57;450_599del |
| 18 | human | 28970 | C11orf54 | chromosome 11 open reading ... | NM_001351990.2 | 78% | 78% | 0_1ins57;450_599del |
| 19 | human | 28970 | C11orf54 | chromosome 11 open reading ... | NM_001369406.2 | 48.8% | 48.8% | 0_1ins333;174_323del |
| 20 | mouse | 70984 | 4931406C07Rik | RIKEN cDNA 4931406C07 gene | NM_001199484.1 | 73.1% | 74.9% | (many diffs) |
| 21 | mouse | 70984 | 4931406C07Rik | RIKEN cDNA 4931406C07 gene | NM_001199485.1 | 73.1% | 74.9% | (many diffs) |
| 22 | mouse | 70984 | 4931406C07Rik | RIKEN cDNA 4931406C07 gene | NM_133732.3 | 73.1% | 74.9% | (many diffs) |
| 23 | mouse | 70984 | 4931406C07Rik | RIKEN cDNA 4931406C07 gene | XM_006510596.2 | 73.1% | 74.9% | (many diffs) |
| 24 | mouse | 70984 | 4931406C07Rik | RIKEN cDNA 4931406C07 gene | NM_001359258.1 | 64.2% | 65.3% | (many diffs) |
| 25 | mouse | 70984 | 4931406C07Rik | RIKEN cDNA 4931406C07 gene | XM_030244585.1 | 42% | 42.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 861
- ORF length:
- 795
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc ttgtgctgag ttttcttttc atgtaccaag tcttgaagag cttgctggag 121 ttatgcagaa ggggttaaaa gataactttg ctgatgtcca ggtctctgta gttgattgcc 181 ctgatttgac taaggaaccc tttacctttc ctgtaaaagg catctgtggg aaaactagaa 241 ttgcagaagt tggaggtgtg ccttacttat tgcctcttgt aaaccaaaaa aaagtttatg 301 atctgaataa aattgcaaaa gaaatcaagc tgcctggagc ctttattctt ggagcaggag 361 caggtccatt tcagactctc gggttcaatt ctgagtttat gccagttatt cagacagaaa 421 gtgaacacaa gcctcctgta aatggaagtt actttgccca tgtgaaccct gcagatggag 481 ggtgccTACT GGAGAAATAC AGTGAGAAAT GTCATGATTT TCAGTGTGCA TTACTGGCTA 541 ATCTTTTTGC CAGTGAAGGC CAACCTGGCA AGCCTGCAGA ATTTTCTTCC TGCCCCTTGA 601 ACTCTGATGA AGAAGTGAAT AAATGGTTGC ATTTTTATGA AATGAAAGCT CCTTTGGTTT 661 GTCTACCAGT TTTTGTCTCC AGAGACCCAG GGTTTGATTT GCGACTGGAG CACACTCATT 721 TTTTTAGTCG TCATGGAGAA GGTGGACACT ACCATTATGA CACTACTCCA GATATAGTGG 781 AATATCTTGG ATACTTCTTA CCTGCAGAGT TTCTCTATCG CATTGATCAA CCAAAAGAGA 841 CGCATTCAAT TGGGCGAGAT TACCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC 901 CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG 961 AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGAAACT TGGAATTAAC 1021 TTCTTAAGCA ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt