Construct: ORF TRCN0000473971

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016914.1_s317c1
Derived from:
ccsbBroadEn_08038
DNA Barcode:
TTACTTCAGTTAATACATAATTTT
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
HBP1 (26959)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000473971
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26959 HBP1 HMG-box transcription factor 1 NM_012257.4 99.8% 94.3% 534C>T;1456G>T
2 human 26959 HBP1 HMG-box transcription factor 1 XM_005250266.3 99.8% 94.3% 534C>T;1456G>T
3 human 26959 HBP1 HMG-box transcription factor 1 XM_005250267.3 99.8% 94.3% 534C>T;1456G>T
4 human 26959 HBP1 HMG-box transcription factor 1 XM_017011967.2 99.8% 94.3% 534C>T;1456G>T
5 human 26959 HBP1 HMG-box transcription factor 1 XM_024446713.1 99.8% 94.3% 534C>T;1456G>T
6 human 26959 HBP1 HMG-box transcription factor 1 XM_024446714.1 99.8% 94.3% 534C>T;1456G>T
7 human 26959 HBP1 HMG-box transcription factor 1 NM_001244262.1 97.9% 92.5% 1_30del;564C>T;1486G>T
8 human 26959 HBP1 HMG-box transcription factor 1 XR_002956419.1 77.9% (many diffs)
9 human 26959 HBP1 HMG-box transcription factor 1 XR_001744628.1 51.6% (many diffs)
10 human 26959 HBP1 HMG-box transcription factor 1 XR_002956420.1 44.2% (many diffs)
11 mouse 73389 Hbp1 high mobility group box tra... XM_017315212.1 91.9% 89.1% (many diffs)
12 mouse 73389 Hbp1 high mobility group box tra... NM_153198.2 90.1% 87.4% (many diffs)
13 mouse 73389 Hbp1 high mobility group box tra... XM_006515228.3 84.4% 82.1% (many diffs)
14 mouse 73389 Hbp1 high mobility group box tra... XM_006515229.3 84.4% 82.1% (many diffs)
15 mouse 73389 Hbp1 high mobility group box tra... XM_006515227.3 82.9% 80.7% (many diffs)
16 mouse 73389 Hbp1 high mobility group box tra... NM_177993.3 80.9% 87.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1521
ORF length:
1455
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggt gtgggaagtg aagacaaatc agatgcctaa tgcagtacag aaactcctgt
121tggtgatgga caagagagcc tcaggaatga atgactcatt ggagttgctg cagtgtaatg
181agaatttgcc atcttcacct ggatataact cctgtgatga acacatggag cttgatgacc
241ttcctgaact tcaggcagtt caaagtgatc ctacccaatc tggcatgtac cagctgagtt
301cagatgtttc acatcaagaa tacccaagat catcttggaa ccaaaatacc tcagacatac
361cagaaactac ttaccgtgaa aatgaggtgg actggctaac agaattggca aatatcgcga
421ccagtccaca aagtccactg atgcagtgct cattttacaa tagatcatct cctgtacaca
481tcatagccac tagcaaaagt ttacattcct atgcacgccc tccaccagtg tcctcttctt
541cgaagagtga accagccttc cctcatcacc attggaagga ggaaacacca gtaagacatg
601aaagggcaaa tagtgagtca gaatctggca ttttctgcat gtcctccctg tcagatgatg
661atgatttggg atggtgcaat tcctggcctt caactgtctg gcactgtttt ttgaaaggca
721cacgactgtg ctttcataag ggaagcaata aggaatggca agatgttgaa gattttgcta
781gagctgaagg ctgtgataat gaggaagatc ttcaaatggg cattcacaag ggctatggtt
841ctgatggtct aaagttgtta tcacatgaag aaagtgtatc atttggcgag tctgtactga
901agttgacttt tgatcctggt acagtagaag atggtttact taccgtagag tgtaagctgg
961accacccttt ctatgttaaa aataaaggtt ggtcatcatt ttatccaagc ttgactgtgg
1021tacagcatgg cattccatgt tgtgaagttc atattggcga tgtatgtcta ccTCCTGGAC
1081ACCCCGATGC CATTAATTTT GATGATTCAG GTGTTTTTGA TACATTTAAA AGCTATGACT
1141TCACACCTAT GGATTCTTCT GCAGTTTATG TGTTAAGTAG TATGGCTCGC CAGCGTCGTG
1201CATCTTTGTC TTGTGGAGGA CCTGGTGGTC AAGACTTTGC AAGATCTGGA TTCAGTAAAA
1261ACTGTGGCTC ACCTGGATCA TCACAGCTCT CTTCCAATTC TTTGTATGCT AAAGCTGTCA
1321AAAACCACAG CTCAGGGACT GTGAGTGCCA CTTCTCCTAA TAAGTGCAAA AGACCAATGA
1381ATGCCTTCAT GCTTTTTGCC AAAAAATACA GAGTTGAATA TACTCAGATG TATCCAGGGA
1441AAGATAACAG AGCCATAAGT GTGATCCTTG GTGACAGGTG GAAGAAAATG AAGAATGAAG
1501AGAGAAGAAT GTACACATTA TAAGCAAAGG CTTTGGCTGA AGAACAGAAA CGTTTAAATC
1561CTGACTGTTG GAAGAGGAAA AGAACCAATT CAGGCTCACA ACAACATTAC CCAACTTTCT
1621TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
1681CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
1741GTGGAAAGGA CGATTACTTC AGTTAATACA TAATTTTACG CGTTAAGTCg acaatcaacc
1801tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)