Construct: ORF TRCN0000474008

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017352.1_s317c1
Derived from:
ccsbBroadEn_03388
DNA Barcode:
TAATCGAAAAGCGATACAGCGACG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZFYVE1 (53349)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474008
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 53349 ZFYVE1 zinc finger FYVE-type conta... NM_021260.4 100% 100%
2 human 53349 ZFYVE1 zinc finger FYVE-type conta... NM_001281734.2 98.1% 98.1% 1516_1517ins42
3 human 53349 ZFYVE1 zinc finger FYVE-type conta... XR_001750376.2 50.6% 1_645del;2063_2064ins98;2879_4312del
4 human 53349 ZFYVE1 zinc finger FYVE-type conta... NM_001281735.1 46.5% 46.5% 0_1ins1245
5 human 53349 ZFYVE1 zinc finger FYVE-type conta... NM_178441.2 46.5% 46.5% 0_1ins1245
6 human 53349 ZFYVE1 zinc finger FYVE-type conta... XM_017021373.1 46.5% 46.5% 0_1ins1245
7 mouse 217695 Zfyve1 zinc finger, FYVE domain co... NM_183154.3 90.1% 96.6% (many diffs)
8 mouse 217695 Zfyve1 zinc finger, FYVE domain co... XM_006515689.3 90.1% 96.6% (many diffs)
9 mouse 217695 Zfyve1 zinc finger, FYVE domain co... XM_006515690.3 90.1% 96.6% (many diffs)
10 mouse 217695 Zfyve1 zinc finger, FYVE domain co... XM_006515691.2 90.1% 96.6% (many diffs)
11 mouse 217695 Zfyve1 zinc finger, FYVE domain co... XM_006515692.3 41.9% 45.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2397
ORF length:
2331
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag tgcccagact tccccagcag agaagggcct gaatccgggg ctgatgtgcc
121aggaaagtta cgcttgcagc gggactgatg aagctatctt tgagtgtgat gagtgctgca
181gtctgcagtg tctccgctgc gaggaggagc tccatcggca ggagcgcctg agaaaccatg
241agcggataag actcaaacct ggccatgtcc cttactgtga cctctgcaag ggtctcagtg
301ggcatttacc aggtgttagg cagagggcaa tagtgaggtg ccagacctgc aaaattaact
361tgtgcctgga gtgccagaag aggactcatt ctgggggtaa caaaaggaga caccctgtta
421ctgtgtacaa tgtcagtaat ctccaggagt cactggaggc agaagagatg gatgaggaga
481ccaagaggaa gaagatgact gagaaggttg tgagtttcct cctagtagac gaaaatgaag
541aaattcaggt aacaaatgaa gaagacttta ttagaaaatt ggactgcaaa cctgatcagc
601atctgaaagt ggtttccatt tttggaaata ctggtgatgg aaagtctcat actctcaacc
661acactttctt ttatggtcgt gaagtcttta aaacctcccc gacccaggag tcctgcactg
721tgggagtgtg ggcagcctat gacccagttc acaaagtagc agtgatcgat acggaagggc
781tcctgggggc caccgtgaat ctaagccaga gaacacggct gctgcttaag gtcctggcca
841tctcagacct cgtcatctat cgaactcatg cagaccggct gcataacgac ctcttcaaat
901tccttgggga tgcctcagaa gcttatctga agcacttcac caaggagctc aaggccacca
961ctgctcgctg tggcctggat gtccctttat ccacactggg ccctgcagtt atcatcttcc
1021atgagaccgt gcacacccag ctactgggct ctgatcatcc ctcagaggtg ccagagaagc
1081tcatccagga ccggttccgg aagctgggcc gtttccctga agcctttagt tccattcact
1141acaagggaac gaggacttac aaccctccca cggacttttc tgggcttcgg cgtgctttgg
1201agcagctact agagaataac accacccgtt ctccccggca cccgggagtc atcttcaaag
1261ccctgaaggc actaagtgac cgcttcagcg gtgagatccc cgatgaccag atggcgcaca
1321gctccttttt tccagatgag tatttcacct gctcctcctt gtgcctcagc tgtggggttg
1381gatgtaagaa aagcatgaat catgggaagg aaggagtgcc tcatgaagcc aagagccgct
1441gcagatactc ccaccagtat gacaaccgag tgtatacctg caaggcctgc tatgagagag
1501gcgaggaagt cagtgtagtg cccaaaacat ctgcttccac tgactccccc tggatgggtc
1561tcgcaaaata tgcctggtct gggtatgtga tcgaatgtcc taactgtggc gtggtctatc
1621gtagtcggca gtactggttt ggaaaccaag atcctgtgga tacggtggtg cggacagaga
1681ttgtgcatgt gtggcctgga actgatgggt ttctgaagga caacaacaat gctgcccagc
1741gcctgttgga cgggatgaac ttcatggctc agtcggtgtc cgagcttagc cttggaccca
1801ccaaggctgt gacttcctgg ctgacagacc agatcgcccc tgcctactgg aggcccaact
1861cccagattct gagctgcaac aagtgtgcga cgtcctttaa agataacgac actaagcatc
1921actgccgagc ctgtggggag ggcttctgtg acagctgttc atcaaagact cggccagtgc
1981ctgagcgggg ctggggccct gcgccagtgc gggtctgtga caactgcTAC GAAGCCAGGA
2041ACGTCCAGTT AGCTGTTACC GAGGCACAAG TGGACGATGA AGGTGGAACG CTCATTGCTC
2101GGAAGGTGGG CGAGGCCGTG CAGAACACTC TGGGAGCCGT GGTGACAGCC ATTGACATAC
2161CACTAGGTCT GGTAAAGGAC GCGGCCAGGC CTGCGTACTG GGTGCCTGAC CACGAAATCC
2221TCCACTGCCA CAACTGCCGG AAGGAGTTCA GCATCAAGCT CTCCAAGCAC CACTGCCGGG
2281CCTGCGGACA GGGCTTCTGT GATGAGTGCT CCCATGACCG CCGGGCTGTT CCTTCTCGTG
2341GCTGGGACCA TCCCGTCCGA GTCTGCTTCA ACTGCAATAA AAAGCCCGGT GACCTTTACC
2401CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
2461TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
2521ATATATCTTG TGGAAAGGAC GATAATCGAA AAGCGATACA GCGACGACGC GTTAAGTCga
2581caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)