Construct: ORF TRCN0000474017

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017004.1_s317c1
Derived from:
ccsbBroadEn_01163
DNA Barcode:
GATACTATTAATTACCGACAGACC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PDHA1 (5160)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474017
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5160 PDHA1 pyruvate dehydrogenase E1 a... NM_000284.4 100% 100%
2 human 5160 PDHA1 pyruvate dehydrogenase E1 a... NM_001173455.1 98.2% 98.2% 289_309del
3 human 5160 PDHA1 pyruvate dehydrogenase E1 a... NM_001173456.1 92% 92% 507_508ins93
4 human 5160 PDHA1 pyruvate dehydrogenase E1 a... NM_001173454.1 91.1% 91.1% 57_170del
5 human 5160 PDHA1 pyruvate dehydrogenase E1 a... XM_017029574.2 83.8% 83.8% 57_170del;621_622ins93
6 human 5161 PDHA2 pyruvate dehydrogenase E1 a... NM_005390.5 83.1% 85.1% (many diffs)
7 mouse 18597 Pdha1 pyruvate dehydrogenase E1 a... NM_008810.3 88.5% 98.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1236
ORF length:
1170
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag gaagatgctc gccgccgtct cccgcgtgct gtctggcgct tctcagaagc
121cggcaagcag agtgctggta gcatcccgta attttgcaaa tgatgctaca tttgaaatta
181agaaatgtga ccttcaccgg ctggaagaag gccctcctgt cacaacagtg ctcaccaggg
241aggatgggct caaatactac aggatgatgc agactgtacg ccgaatggag ttgaaagcag
301atcagctgta taaacagaaa attattcgtg gtttctgtca cttgtgtgat ggtcaggaag
361cttgctgtgt gggcctggag gccggcatca accccacaga ccatctcatc acagcctacc
421gggctcacgg ctttactttc acccggggcc tttccgtccg agaaattctc gcagagctta
481caggacgaaa aggaggttgt gctaaaggga aaggaggatc gatgcacatg tatgccaaga
541acttctacgg gggcaatggc atcgtgggag cgcaggtgcc cctgggcgct gggattgctc
601tagcctgtaa gtataatgga aaagatgagg tctgcctgac tttatatggc gatggtgctg
661ctaaccaggg ccagatattc gaagcttaca acatggcagc tttgtggaaa ttacctTGTA
721TTTTCATCTG TGAGAATAAT CGCTATGGAA TGGGAACGTC TGTTGAGAGA GCGGCAGCCA
781GCACTGATTA CTACAAGAGA GGCGATTTCA TTCCTGGGCT GAGAGTGGAT GGAATGGATA
841TCCTGTGCGT CCGAGAGGCA ACAAGGTTTG CTGCTGCCTA TTGTAGATCT GGGAAGGGGC
901CCATCCTGAT GGAGCTGCAG ACTTACCGTT ACCACGGACA CAGTATGAGT GACCCTGGAG
961TCAGTTACCG TACACGAGAA GAAATTCAGG AAGTAAGAAG TAAGAGTGAC CCTATTATGC
1021TTCTCAAGGA CAGGATGGTG AACAGCAATC TTGCCAGTGT GGAAGAACTA AAGGAAATTG
1081ATGTGGAAGT GAGGAAGGAG ATTGAGGATG CTGCCCAGTT TGCCACGGCC GATCCTGAGC
1141CACCTTTGGA AGAGCTGGGC TACCACATCT ACTCCAGCGA CCCACCTTTT GAAGTTCGTG
1201GTGCCAATCA GTGGATCAAG TTTAAGTCAG TCAGTTACCC AACTTTCTTG TACAAAGTGG
1261TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
1321CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
1381AGATACTATT AATTACCGAC AGACCACGCG TTAAGTCgac aatcaacctc tggattacaa
1441aatttgtgaa agatt

Download FASTA (ORF) (Full)