Construct: ORF TRCN0000474237

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006617.1_s317c1
Derived from:
ccsbBroadEn_10788
DNA Barcode:
AATGCATTGCCCTCAATCATTTTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RCAN1 (1827)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474237
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1827 RCAN1 regulator of calcineurin 1 NM_203418.3 90.1% 88.8% (many diffs)
2 human 1827 RCAN1 regulator of calcineurin 1 NM_001285389.2 86.1% 85.2% (many diffs)
3 human 1827 RCAN1 regulator of calcineurin 1 NM_004414.7 78.1% 78.1% 1_165del
4 human 1827 RCAN1 regulator of calcineurin 1 NM_001285391.2 68.6% 61.6% (many diffs)
5 human 1827 RCAN1 regulator of calcineurin 1 XM_017028283.1 68.6% 61.6% (many diffs)
6 human 1827 RCAN1 regulator of calcineurin 1 NM_001331016.1 62.1% 54.3% (many diffs)
7 human 1827 RCAN1 regulator of calcineurin 1 NM_001285392.2 59.3% 59.3% 0_1ins240
8 human 1827 RCAN1 regulator of calcineurin 1 NM_001285393.2 59.3% 59.3% 0_1ins240
9 human 1827 RCAN1 regulator of calcineurin 1 NM_203417.2 59.3% 59.3% 0_1ins240
10 human 1827 RCAN1 regulator of calcineurin 1 XM_005260929.2 56.2% 51.5% (many diffs)
11 human 1827 RCAN1 regulator of calcineurin 1 XM_017028282.2 49.6% 39.1% (many diffs)
12 mouse 54720 Rcan1 regulator of calcineurin 1 NM_019466.4 76.8% 86.8% (many diffs)
13 mouse 54720 Rcan1 regulator of calcineurin 1 NM_001081549.2 70.3% 76.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
657
ORF length:
591
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga ggaggtggac ctgcaggacc tgcccagcgc caccatcgcc tgtcacctGG
121ACCCGCGCGT GTTCGTGGAC GGCCTGTGCC GGGCCAAATT TGAGTCCCTC TTTAGGACGT
181ATGACAAGGA CATCACCTTT CAGTATTTTA AGAGCTTCAA ACGAGTCAGA ATAAACTTCA
241GCAACCCCTT CTCCGCAGCA GATGCCAGGC TCCAGCTGCA TAAGACTGAG TTTCTGGGAA
301AGGAAATGAA GTTATATTTT GCTCAGACCT TACACATAGG AAGCTCACAC CTGGCTCCGC
361CAAATCCAGA CAAGCAGTTT CTGATCTCCC CTCCCGCCTC TCCGCCAGTG GGATGGAAAC
421AAGTGGAAGA TGCGACCCCA GTCATAAACT ATGATCTCTT ATATGCCATC TCCAAGCTGG
481GGCCAGGGGA AAAGTATGAA TTGCACGCAG CGACTGACAC CACTCCCAGC GTGGTGGTCC
541ATGTATGTGA GAGTGATCAA GAGAAGGAGG AAGAAGAGGA AATGGAAAGA ATGAGGAGAC
601CTAAGCCAAA AATTATCCAG ACCAGGAGGC CGGAGTACAC GCCGATCCAC CTCAGCTGCC
661CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
721TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
781ATATATCTTG TGGAAAGGAC GAAATGCATT GCCCTCAATC ATTTTCACGC GTTAAGTCga
841caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)