Construct: ORF TRCN0000474286

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015402.1_s317c1
Derived from:
ccsbBroadEn_02654
DNA Barcode:
GCCTCAAACTTCACCCGTCTTGTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PDCD10 (11235)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474286
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11235 PDCD10 programmed cell death 10 NM_007217.4 100% 100%
2 human 11235 PDCD10 programmed cell death 10 NM_145859.1 100% 100%
3 human 11235 PDCD10 programmed cell death 10 NM_145860.1 100% 100%
4 human 11235 PDCD10 programmed cell death 10 XM_005247086.5 100% 100%
5 human 11235 PDCD10 programmed cell death 10 XM_005247087.5 100% 100%
6 human 11235 PDCD10 programmed cell death 10 XM_005247088.4 100% 100%
7 human 11235 PDCD10 programmed cell death 10 XM_006713485.4 100% 100%
8 human 11235 PDCD10 programmed cell death 10 XM_011512368.3 100% 100%
9 human 11235 PDCD10 programmed cell death 10 XM_011512369.3 100% 100%
10 human 11235 PDCD10 programmed cell death 10 XM_017005644.2 100% 100%
11 human 11235 PDCD10 programmed cell death 10 XM_017005645.2 70.2% 70.2% 0_1ins189
12 human 11235 PDCD10 programmed cell death 10 XM_024453329.1 70.2% 70.2% 0_1ins189
13 human 11235 PDCD10 programmed cell death 10 XM_024453330.1 70.2% 70.2% 0_1ins189
14 human 11235 PDCD10 programmed cell death 10 XM_024453331.1 70.2% 70.2% 0_1ins189
15 mouse 56426 Pdcd10 programmed cell death 10 NM_019745.4 94.8% 99.5% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
702
ORF length:
636
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag gatgacaatg gaagagatga agaatgaagc tgagaccaca tccatggttt
121ctatgcccct ctatgcagtc atgtatcctg tgtttaatga gctagaacga gtaaatctgt
181ctgcagccca gacactgaga gccgctttca tcaaggctga aaaagaaaat ccaggtctca
241cacaagacat cattatgaaa attttagaga aaaaaagcgt ggaagttaac ttcacggagt
301cccTTCTTCG TATGGCAGCT GATGATGTAG AAGAGTATAT GATTGAACGA CCAGAGCCAG
361AATTCCAAGA CCTAAACGAA AAGGCACGAG CACTTAAACA AATTCTCAGT AAGATCCCAG
421ATGAGATCAA TGACAGAGTG AGGTTTCTGC AGACAATCAA GGATATAGCT AGTGCAATAA
481AAGAACTTCT TGATACAGTG AATAATGTCT TCAAGAAATA TCAATACCAG AACCGCAGGG
541CACTTGAACA CCAAAAGAAA GAATTTGTAA AGTACTCCAA AAGTTTCAGT GATACTCTGA
601AAACGTATTT TAAAGATGGC AAGGCAATAA ATGTGTTCGT AAGTGCCAAC CGACTAATTC
661ATCAAACCAA CTTAATACTT CAGACCTTCA AAACTGTGGC CTGCCCAACT TTCTTGTACA
721AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
781AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
841AGGACGAGCC TCAAACTTCA CCCGTCTTGT GACGCGTTAA GTCgacaatc aacctctgga
901ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)