Construct: ORF TRCN0000474311
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010573.1_s317c1
- Derived from:
- ccsbBroadEn_09444
- DNA Barcode:
- CCTGCGAGCGAGTGCTCAGTGCGT
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- SSX2IP (117178)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000474311
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 117178 | SSX2IP | SSX family member 2 interac... | NM_001166293.2 | 99.7% | 99.3% | (many diffs) |
| 2 | human | 117178 | SSX2IP | SSX family member 2 interac... | NM_001166417.2 | 99.7% | 99.3% | (many diffs) |
| 3 | human | 117178 | SSX2IP | SSX family member 2 interac... | NM_014021.4 | 99.7% | 99.3% | (many diffs) |
| 4 | human | 117178 | SSX2IP | SSX family member 2 interac... | XM_005270427.2 | 99.7% | 99.3% | (many diffs) |
| 5 | human | 117178 | SSX2IP | SSX family member 2 interac... | XM_005270428.2 | 99.7% | 99.3% | (many diffs) |
| 6 | human | 117178 | SSX2IP | SSX family member 2 interac... | XM_017000234.2 | 99.7% | 99.3% | (many diffs) |
| 7 | human | 117178 | SSX2IP | SSX family member 2 interac... | XM_005270429.2 | 99.6% | 99.1% | (many diffs) |
| 8 | human | 117178 | SSX2IP | SSX family member 2 interac... | XM_017000235.2 | 99.6% | 99.1% | (many diffs) |
| 9 | human | 117178 | SSX2IP | SSX family member 2 interac... | XM_017000236.2 | 99.6% | 99.1% | (many diffs) |
| 10 | human | 117178 | SSX2IP | SSX family member 2 interac... | XM_024453015.1 | 99.6% | 99.1% | (many diffs) |
| 11 | human | 117178 | SSX2IP | SSX family member 2 interac... | NM_001166294.2 | 95.4% | 95.2% | 0_1ins81;1677A>G;1757T>A |
| 12 | human | 117178 | SSX2IP | SSX family member 2 interac... | NM_001166295.1 | 95.4% | 95.2% | 0_1ins81;1677A>G;1757T>A |
| 13 | human | 117178 | SSX2IP | SSX family member 2 interac... | XM_006710331.2 | 95.4% | 95.2% | 0_1ins81;1677A>G;1757T>A |
| 14 | human | 117178 | SSX2IP | SSX family member 2 interac... | XM_017000237.2 | 95.3% | 95.1% | (many diffs) |
| 15 | human | 117178 | SSX2IP | SSX family member 2 interac... | XM_011540612.2 | 82.1% | 81.5% | (many diffs) |
| 16 | human | 117178 | SSX2IP | SSX family member 2 interac... | XM_024453018.1 | 81.9% | 81.3% | (many diffs) |
| 17 | human | 117178 | SSX2IP | SSX family member 2 interac... | XR_946540.1 | 31.9% | (many diffs) | |
| 18 | mouse | 99167 | Ssx2ip | synovial sarcoma, X 2 inter... | NM_138744.3 | 83.9% | 86.8% | (many diffs) |
| 19 | mouse | 99167 | Ssx2ip | synovial sarcoma, X 2 inter... | XM_006502404.3 | 83.9% | 86.8% | (many diffs) |
| 20 | mouse | 99167 | Ssx2ip | synovial sarcoma, X 2 inter... | XM_006502405.3 | 83.9% | 86.8% | (many diffs) |
| 21 | mouse | 99167 | Ssx2ip | synovial sarcoma, X 2 inter... | XM_006502406.3 | 83.9% | 86.8% | (many diffs) |
| 22 | mouse | 99167 | Ssx2ip | synovial sarcoma, X 2 inter... | NM_001253768.1 | 83.7% | 86.6% | (many diffs) |
| 23 | mouse | 99167 | Ssx2ip | synovial sarcoma, X 2 inter... | NM_001253769.1 | 83.7% | 86.6% | (many diffs) |
| 24 | mouse | 99167 | Ssx2ip | synovial sarcoma, X 2 inter... | NM_001253770.1 | 83.7% | 86.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1902
- ORF length:
- 1836
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggt agattggttg actgttacag atccaggtct gtcttcagaa agcaaaacta 121 tctctcaata tacctcagaa acaaagatgt ctccatcaag tttatactca cagcaagtgc 181 tatgttcttc aataccttta tcgaaaaatg tgcacagttt tttcagtgcc ttctgcacag 241 aagataatat tgaacagagt atctcatatc ttgatcagga attgactact tttggttttc 301 cttcattata tgaagaatcc aaaggtaaag agacaaagag agagttaaat atagtagctg 361 tactaaattg tatgaatgag ctgcttgtgc ttcagcggaa gaaccttcta gctcaggaaa 421 atgtggagac acagaatttg aagctgggaa gtgatatgga ccatctacag agctgctact 481 caaaacttaa ggaacaactg gaaacctcca ggagggaaat gattgggctt caggaaagag 541 acagacagtt acaatgtaag aacaggaatt tgcatcagct actaaagaat gagaaagatg 601 aggtgcaaaa attacaaaat atcattgcaa gtcgagctac tcagtataat catgatatga 661 agagaaaaga gcgtgaatat aataaactga aggaacgtct acatcaactt gttatgaaca 721 agaaagataa gaaaatagct atggacattt tgaattatgt cgggagagct gatggaaaaa 781 gaggctcctg gaggactggt aaaactgaag ccaggaatga agatgaaatg tataaaattc 841 tcttgaatga ttatgaatat cgtcagaaac aaatcctaat ggaaaatgca gaacttaaga 901 aggttcttca acaaatgaaa aaggaaatga tttctcttct ttctccccaa aagaagaaac 961 ctagagaaag agtagatgat agtacaggaa ctgttatttc cgatgttgaa gaagatgccg 1021 gggaactaag cagagagagt atgtgggacc tttcctgtga aactgtgaga gagcagctta 1081 caaacagcat cagaaaacag tggagaattt tgaaaagtca tgtagaaaag cttgataacc 1141 aagtttcaaa ggtacacctg gaaggtttta atgatgaaga tgtaatctca cgacaagacc 1201 atgaacaaga aactgaaaaa ctcgagttag aaattcagca gtgtaaagaa atgattaaaa 1261 ctcagcaaca gcttttacag cagcagctcg ctactgcata tgatgatgat accacttcac 1321 tattacgaga ctgttatttg ttggaagaaa aggaacgtct caaagaagaa tggtcccttt 1381 ttaaagagca gaaaaagaat tttgagaggg agagacgaag ctttacagaa gccgctattc 1441 gcctgggatt ggagagaaag gcatttgaag aagaaagagc cagttggtta aagcagcagt 1501 ttctaaatat gactaCCTTT GACCACCAGA ACTCAGAAAA TGTGAAACTT TTCAGTGCCT 1561 TCTCAGGAAG TTCTGATTGG GACAATCTTA TAGTGCACTC GAGGCAGCCG CAAAAGAAGC 1621 CTCACAGTGT GTCTAATGGG TCTCCAGTTT GCATGTCTAA ACTTACTAAA TCTCTTCCTG 1681 CTTCACCTTC CACTTCAGAC TTTTGCCAGA CACGTTCCTG CATATCTGAA CATAGTTCAA 1741 TCAATGTACT GAATATAACT GCTGAAGAAA TTAAACCAAA TCAGGTTGGA GGAGAATGTA 1801 CAAATCAAAA ATGGAGTGTG GCGTCAAGAC CTGGATCACA GGAAGGTTGC TATAGTGGAT 1861 GCTCCTTGAG CTACACAAAT TCTCATGTAG AAAAAGATGA CTAACCTTAC CCAACTTTCT 1921 TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA 1981 CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT 2041 GTGGAAAGGA CGACCTGCGA GCGAGTGCTC AGTGCGTACG CGTTAAGTCg acaatcaacc 2101 tctggattac aaaatttgtg aaagatt