Construct: ORF TRCN0000474422

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000254.1_s317c1
Derived from:
ccsbBroadEn_13503
DNA Barcode:
CGTCATTATATTCCTCTCCAGGAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CEP170B (283638)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474422
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 283638 CEP170B centrosomal protein 170B XM_011536667.2 15.2% 15.2% 1_2568del
2 human 283638 CEP170B centrosomal protein 170B NM_015005.3 10.1% 10.1% 1_4095del
3 human 283638 CEP170B centrosomal protein 170B NM_001112726.3 9.9% 9.9% 1_4200del
4 human 283638 CEP170B centrosomal protein 170B XM_005267550.4 9.6% 9.6% 1_4305del
5 human 283638 CEP170B centrosomal protein 170B XM_011536665.2 9.6% 9.6% 1_4305del
6 human 283638 CEP170B centrosomal protein 170B XM_011536666.2 9.6% 9.6% 1_4305del
7 human 283638 CEP170B centrosomal protein 170B XM_017021228.1 9.4% 9.4% 1_4428del
8 human 283638 CEP170B centrosomal protein 170B XM_017021227.1 9.2% 9.2% 1_4533del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
528
ORF length:
462
Sequence:
1tcttCCATTT CAGGTGTCGT GAGGCTAGCA TCGATTGATC AACAAGTTTG TACAAAAAAG
61TTGGCATGCT GAACCCGGTG TCCCAGCTGT CGCAGGCCAT CCGTGAGAAC ACAGAGCACC
121TTGCCGAGAA GATGAAGATC CTCTTTCAGA ACACAGGGAG AGCTTGGGAG GACCTGGAAG
181CCAGGATCAA CGCCGAGAAC GAGGTGCCCA TCCTGAAGAC ATCTAACAAG GAAATCAGCT
241CCATCCTGAA GGAACTGAGG CGGGTGCAGA AACAGCTGGA AGTTATCAAT GCCATCGTGG
301ACCCCAGTGG GAGCCTGGAC CTGCTCACAG GAAACAGGAG CTTGGCCAGC TCTGCACAGC
361CGGGGCTGGG GAAGGGCCGC GTGGCTGCCC AGAGCCCACC CTCACCCGCC TCAGCCGAGG
421CCCTGCTGCC AGCCCTGCCC CTGAGGAATT TCCCACAGCG GGCCAGCTGT GGGCCTCCCA
481GCCTCCCGGA CCCCACCTTC CTCCCTGATG CCGAGAGGTT CCTGATCTAC CCAACTTTCT
541TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
601CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
661GTGGAAAGGA CGACGTCATT ATATTCCTCT CCAGGATACG CGTTAAGTCg acaatcaacc
721tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)