Transcript: Human XM_017021227.1

PREDICTED: Homo sapiens centrosomal protein 170B (CEP170B), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CEP170B (283638)
Length:
7544
CDS:
748..5745

Additional Resources:

NCBI RefSeq record:
XM_017021227.1
NBCI Gene record:
CEP170B (283638)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017021227.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000432540 GCTACGATTCCAACATGTATG pLKO_005 1244 CDS 100% 10.800 15.120 N CEP170B n/a
2 TRCN0000168281 GTGTTATCTAGGAAACCGCTT pLKO.1 3394 CDS 100% 2.160 1.728 N CEP170B n/a
3 TRCN0000416550 GTCAGTGCCAATGGGAGAATG pLKO_005 3487 CDS 100% 10.800 7.560 N CEP170B n/a
4 TRCN0000172296 CCCTGGCAAGATGAAGATCAA pLKO.1 1806 CDS 100% 4.950 3.465 N CEP170B n/a
5 TRCN0000172777 GCCTCCTCTTCATCACTGTTA pLKO.1 6038 3UTR 100% 4.950 3.465 N CEP170B n/a
6 TRCN0000167962 CGAGAAGATGAAGATCCTCTT pLKO.1 5340 CDS 100% 4.050 2.835 N CEP170B n/a
7 TRCN0000168618 GAAAGAGTTGTTGGTGCCATT pLKO.1 6080 3UTR 100% 4.050 2.835 N CEP170B n/a
8 TRCN0000168528 CTCCTCTCTAATTCTGTGGAT pLKO.1 3757 CDS 100% 2.640 1.848 N CEP170B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017021227.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13503 pDONR223 100% 9.2% 9.2% None 1_4533del n/a
2 ccsbBroad304_13503 pLX_304 0% 9.2% 9.2% V5 1_4533del n/a
3 TRCN0000474422 CGTCATTATATTCCTCTCCAGGAT pLX_317 100% 9.2% 9.2% V5 1_4533del n/a
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