Construct: ORF TRCN0000474604

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015880.1_s317c1
Derived from:
ccsbBroadEn_12199
DNA Barcode:
AGAAGAAAATGCAGTGCTGTTGTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TMEM40 (55287)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474604
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55287 TMEM40 transmembrane protein 40 NM_001284407.2 100% 100%
2 human 55287 TMEM40 transmembrane protein 40 NM_018306.4 87.1% 87.1% 211_300del
3 human 55287 TMEM40 transmembrane protein 40 XM_011533937.2 87.1% 87.1% 211_300del
4 human 55287 TMEM40 transmembrane protein 40 NM_001284406.1 81.5% 81.5% 1_48del;259_348del
5 human 55287 TMEM40 transmembrane protein 40 NM_001284408.2 77.3% 76.8% 73_74ins138
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
675
ORF length:
609
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga gacttcagca tcctcctccc agcctcagga caacagtcaa gtccacagag
121aaacagaaga tgtagactat ggagagacag atttccacaa gcaagatggg aaggctggac
181tcttttccca agaacaatat gagagaaaca agtcttcttc ctcctcctcc tcttcctcct
241catcctcctc atcttcttca tcctcctcct cctcaggtcc tgggcatggg gagcctgacg
301ttttgaagga tgagcttcaa ctctatggag atgctcctgg agaggtggta ccctctgggG
361AATCAGGACT CCGAAGGAGA GGCTCTGACC CAGCAAGTGG AGAAGTGGAG GCCTCTCAGT
421TAAGAAGACT GAATATAAAG AAAGATGATG AGTTTTTCCA TTTCGTCCTC CTGTGCTTTG
481CCATCGGGGC CTTGCTGGTG TGTTATCACT ATTACGCAGA CTGGTTCATG TCTCTTGGGG
541TCGGCCTGCT CACCTTCGCC TCCCTGGAAA CCGTTGGCAT CTACTTCGGA CTAGTGTACC
601GTATCCACAG CGTCCTCCAA GGCTTCATCC CCCTCTTCCA GAAGTTTAGG CTGACAGGGT
661TCAGGAAGAC TGACTGCCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
721CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
781TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA AGAAGAAAAT GCAGTGCTGT
841TGTCACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)