Construct: ORF TRCN0000474870
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000638.1_s317c1
- Derived from:
- ccsbBroadEn_16029
- DNA Barcode:
- GTTACCACAAGAGTTATCGGATAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZCCHC7 (84186)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000474870
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | XM_011518050.2 | 39.9% | 39.7% | 193T>C;611_612insCCA;616_1533del |
| 2 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | XM_017015197.1 | 39.9% | 39.7% | 193T>C;611_612insCCA;616_1533del |
| 3 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | XM_017015198.1 | 39.9% | 39.7% | 193T>C;611_612insCCA;616_1533del |
| 4 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | NM_001289119.1 | 37.6% | 37.3% | 193T>C;611_612insCCA;616_1629del |
| 5 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | NM_001289120.1 | 37.6% | 37.3% | 193T>C;611_612insCCA;616_1629del |
| 6 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | NM_001289121.1 | 37.6% | 37.3% | 193T>C;611_612insCCA;616_1629del |
| 7 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | NM_032226.2 | 37.6% | 37.3% | 193T>C;611_612insCCA;616_1629del |
| 8 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | XM_005251608.4 | 37.6% | 37.3% | 193T>C;611_612insCCA;616_1629del |
| 9 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | XM_005251612.3 | 37.6% | 37.3% | 193T>C;611_612insCCA;616_1629del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 684
- ORF length:
- 618
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgat gtttggtggc tatgagacta tagaagcata cgaagatgat ctttatcgag 121 atgagtcatc tagtgaactg agtgttgata gtgaggtgga atttcaactc tatagccaaa 181 ttcattatgc ccaagatctt gatgatgtca tcagggagga agagcatgaa gaaaagaact 241 ctgggaattc ggaatctccg agtagtaaac caaatcagaa gaagctaatc gtcctttcag 301 atagtgaggt catccagctg tcagatgggt cagaggtcat cactttgtct gatgaagaca 361 gtattTATAG ATGTAAAGGA AAGAATGTTA GAGTTCAAGC ACAAGAAAAT GCCCATGGTC 421 TTTCTTCTTC TCTTCAATCT AATGAGCTGG TTGATAAGAA ATGCAAGAGT GATATTGAGA 481 AGCCTAAATC TGAAGAGAGA TCAGGTGTAA TCCGAGAGGT CATGATTATA GAGGTCAGTT 541 CAAGTGAAGA GGAAGAGAGC ACCATTTCAG AAGGTGATAA TGTGGAAAGC TGGATGCTAC 601 TGGGATGTGA AGTAGATGAT AAAGATGATG ATATCCTTCT CAACCTTGTG GGATGTGAAA 661 ACTCTGTTAC TGAAGGCCAA GAATACCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA 721 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 781 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAG TTACCACAAG 841 AGTTATCGGA TACACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 901 att