Construct: ORF TRCN0000474881

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008607.1_s317c1
Derived from:
ccsbBroadEn_04924
DNA Barcode:
AGGTGCAAGCATGGCAACCTTTTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MAGEC3 (139081)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474881
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 139081 MAGEC3 MAGE family member C3 NM_177456.2 100% 100%
2 human 139081 MAGEC3 MAGE family member C3 XM_011531267.3 100% 100%
3 human 139081 MAGEC3 MAGE family member C3 XM_017029265.2 100% 100%
4 human 139081 MAGEC3 MAGE family member C3 NM_138702.1 38.5% 33.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1107
ORF length:
1038
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gcctctcttt ccaaaccttc cacgcctcag ctttgaggaa gacttccaga
121acccgagtgt gacagaggac ttggtagatg cacaggattc catagatgag gaggaggagg
181atgcctcctc cacttcctct tcctctttcc actttttatt cccctcctcc tcttccttgt
241cctcatcctc acccttgtcc tcacccttac cctctactct cattctgggt gttccagaag
301atgaggatat gcctgctgct gggatgccac ctcttcccca gagtcctcct gagattcctc
361cccagggtcc tcccaagatc tctccccagg gtcctccgca gagtcctccc cagagtcctc
421tagactcctg ctcatcccct cttttgtgga cccgattgga tgaggagtcc agcagtgaag
481aggaggatac agctacttgg catgccttgc cagaaagtga atccttgccc aggtatgccc
541tggatgaaaa ggtggctgag ttggtgcagt ttcttctcct caaatatcaa acaaaagagc
601ctgtcacaaa ggcagagatg ctgacgactg tcatcaagaa gtataaggac tattttccca
661tgatcttcgg gaaagcccat gagttcatag agctaatttt tggcattgcc ctgactgata
721tggaccccga caaccactcc tatttctttg aagacacatt agacctcacc tatgagggaa
781gcctgattga tgaccagggc atgcccaaga actgtctcct gattcTTATT CTCAGTATGA
841TCTTCATAAA GGGCAGCTGT GTCCCCGAGG AGGTCATCTG GGAAGTGTTG AGTGCAATAG
901GGGTGTGTGC TGGGAGGGAG CACTTTATAT ATGGGGATCC CAGAAAGCTG CTCACTATAC
961ATTGGGTGCA GAGAAAGTAC CTGGAGTACC GGGAGGTGCC CAACAGTGCT CCTCCACGTT
1021ATGAATTTTT GTGGGGTCCA AGAGCCCATT CAGAGGCCAG CAAGAGAAGT CTTAGAGTTT
1081TTATCCAAGC TATCCAGTAT CATCCCTTGC CAACTTTCTT GTACAAAGTG GTTGATATCG
1141GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
1201AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAAGGTGCAA
1261GCATGGCAAC CTTTTTACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
1321aagatt

Download FASTA (ORF) (Full)